Gene

sil1

ID
ZDB-GENE-160113-49
Name
SIL1 nucleotide exchange factor
Symbol
sil1 Nomenclature History
Previous Names
  • si:ch211-195b11.7 (1)
Type
protein_coding_gene
Location
Chr: 14 Mapping Details/Browsers
Description
Involved in eye development and skeletal muscle fiber development. Used to study Marinesco-Sjogren syndrome. Human ortholog(s) of this gene implicated in primary cerebellar degeneration. Orthologous to human SIL1 (SIL1 nucleotide exchange factor).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
5 figures from Kawahara et al., 2016
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With sil1 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Marinesco-Sjogren syndrome Alliance Marinesco-Sjogren syndrome 248800
Associated With sil1 Via Experimental Models
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR013918 Nucleotide exchange factor Fes1
Family IPR050693 Hsp70 Nucleotide Exchange Factors and Inhibitors
Homologous_superfamily IPR011989 Armadillo-like helical
Homologous_superfamily IPR016024 Armadillo-type fold
Domain Details Per Protein
Protein Length Armadillo-like helical Armadillo-type fold Hsp70 Nucleotide Exchange Factors and Inhibitors Nucleotide exchange factor Fes1
UniProtKB:A0A0G2KDW7 463
UniProtKB:A0A8M3AS71 463
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA sil1-201 (1) Ensembl 1,922 nt
Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab1-sil1 polyclonal Rabbit
1
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations