Gene

clmna

ID

ZDB-GENE-131127-546

Name

calmin a

Symbol

clmna Nomenclature History

Previous Names

clmn
si:ch211-196p2.2 (1)

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Predicted to have actin binding activity. Orthologous to human CLMN (calmin).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With clmna Human Ortholog

No data available

Associated With clmna Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR001589	Actinin-type actin-binding domain, conserved site
Domain	IPR001715	Calponin homology domain
Domain	IPR047826	Calmin, second calponin homology domain
Family	IPR052403	LINC complex-associated protein
Homologous_superfamily	IPR036872	CH domain superfamily

Domain Details Per Protein

Protein	Length	Actinin-type actin-binding domain, conserved site	Calmin, second calponin homology domain	Calponin homology domain	CH domain superfamily	LINC complex-associated protein
UniProtKB:A0A8M1RE43 InterPro	1103

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	clmn-201 (1) Ensembl	Ensembl		3,468 nt	Select Tool ZFIN BLAST
mRNA	clmn-202 (1) Ensembl	Ensembl		300 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations