Gene
caln1
- ID
- ZDB-GENE-130313-1
- Name
- calneuron 1
- Symbol
- caln1 Nomenclature History
- Previous Names
-
- cabp8a (1)
- si:dkeyp-108d9.1
- Type
- protein_coding_gene
- Location
- Chr: 15 Mapping Details/Browsers
- Description
- Predicted to enable calcium ion binding activity. Predicted to be located in perinuclear region of cytoplasm and plasma membrane. Predicted to be active in trans-Golgi network membrane. Is expressed in brain; pronephric duct; retinal ganglion cell layer; and spinal cord. Orthologous to human CALN1 (calneuron 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Di Donato et al., 2013
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa8786 | Allele with one point mutation | Unknown | Unknown | ENU |
1 - 1 of 1
Show
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Binding_site | IPR018247 | EF-Hand 1, calcium-binding site |
| Conserved_site | IPR001751 | S100/Calcium binding protein 7/8-like, conserved site |
| Domain | IPR002048 | EF-hand domain |
| Family | IPR051111 | Calcium-binding regulatory protein |
| Homologous_superfamily | IPR011992 | EF-hand domain pair |
1 - 5 of 5
Domain Details Per Protein
| Protein | Additional Resources | Length | Calcium-binding regulatory protein | EF-Hand 1, calcium-binding site | EF-hand domain | EF-hand domain pair | S100/Calcium binding protein 7/8-like, conserved site |
|---|---|---|---|---|---|---|---|
| UniProtKB:X1WE84 | InterPro | 219 | |||||
| UniProtKB:A0A8M9PIG6 | InterPro | 262 |
1 - 2 of 2
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-148C4 | ZFIN Curated Data | |
| Contained in | BAC | DKEYP-108D9 |
1 - 2 of 2
Show
| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_021466346 (1) | |||
| Genomic | GenBank:BX649487 (1) | 201933 nt | ||
| Polypeptide | UniProtKB:A0A8M9PIG6 (1) | 262 aa |
- Picton, L.D., Bertuzzi, M., Pallucchi, I., Fontanel, P., Dahlberg, E., Björnfors, E.R., Iacoviello, F., Shearing, P.R., El Manira, A. (2021) A spinal organ of proprioception for integrated motor action feedback. Neuron. 109(7):1188-1201.e7
- Wang, Z., Liu, P., Hu, M., Lu, S., Lyu, Z., Kou, Y., Sun, Y., Zhao, X., Liu, F., Tian, J. (2021) A Research Article Submitted to Journal of Ethnopharmacology Naoxintong restores Ischemia Injury and inhibits Thrombosis via COX2-VEGF/ NFκB Signaling. Journal of ethnopharmacology. 270:113809
- Conant, G.C. (2020) The lasting after-effects of an ancient polyploidy on the genomes of teleosts. PLoS One. 15:e0231356
- Di Donato, V., Auer, T.O., Duroure, K., and Del Bene, F. (2013) Characterization of the calcium binding protein family in zebrafish. PLoS One. 8(1):e53299
1 - 4 of 4
Show