Gene

ptx4

ID

ZDB-GENE-120215-70

Name

pentraxin 4, long

Symbol

ptx4 Nomenclature History

Previous Names

fb77c07
si:ch211-157c3.5
wu:fb77c07

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to localize to integral component of membrane. Orthologous to human PTX4 (pentraxin 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ptx4 Human Ortholog

No data available

Associated With ptx4 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR001759	Pentraxin-related
Family	IPR051360	Neuronal Pentraxin and Related
Homologous_superfamily	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily

Domain Details Per Protein

Protein	Length	Concanavalin A-like lectin/glucanase domain superfamily	Neuronal Pentraxin and Related	Pentraxin-related
UniProtKB:A0A8M9Q479 InterPro	502

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	ptx4-201 (1) Ensembl	Ensembl		2,369 nt	Select Tool ZFIN BLAST
ncRNA	ptx4-002 (1) Ensembl	Ensembl		452 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations