Gene
strc1
- ID
- ZDB-GENE-110411-215
- Name
- stereocilin 1
- Symbol
- strc1 Nomenclature History
- Previous Names
-
- si:ch211-150j10.4 (1)
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Description
- Predicted to be involved in cell-matrix adhesion. Predicted to be located in membrane. Predicted to be active in cell surface. Is expressed in neuromast.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Erickson et al., 2015
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Stereocilin, LRR domain | Stereocilin-related |
|---|---|---|---|---|
| UniProtKB:A0A2R8PYF0 | InterPro | 2000 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-150j10.4-201
(1)
|
Ensembl | 5,815 nt | ||
| mRNA |
si:ch211-150j10.4-202
(1)
|
Ensembl | 1,068 nt | ||
| mRNA |
strc1-203
(1)
|
Ensembl | 6,569 nt | ||
| mRNA |
strc1-204
(1)
|
Ensembl | 6,473 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-150J10 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_005168943 (1) | |||
| Genomic | GenBank:CR293520 (1) | 168537 nt | ||
| Polypeptide | UniProtKB:A0A2R8PYF0 (1) | 2000 aa |
No data available
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Erickson, T., Nicolson, T. (2015) Identification of sensory hair-cell transcripts by thiouracil-tagging in zebrafish. BMC Genomics. 16:842
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