Gene

bahcc1b

ID

ZDB-GENE-100716-2

Name

BAH domain and coiled-coil containing 1b

Symbol

bahcc1b Nomenclature History

Previous Names

bahcc1
im:7138780
unm_sa874

Type

protein_coding_gene

Location

Chr: 12 Mapping Details/Browsers

Description

Predicted to enable chromatin binding activity. Orthologous to human BAHCC1 (BAH domain and coiled-coil containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7138780 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa874	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)
sa15411	Allele with one point mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa24918	Allele with one point mutation	Unknown	Splice Site	ENU
sa35350	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa35351	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa42078	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa42079	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa45472	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)
sa45473	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this)

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Sequence Targeting Reagents

No data available

Human Disease

Associated With bahcc1b Human Ortholog

No data available

Associated With bahcc1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001025	Bromo adjacent homology (BAH) domain
Domain	IPR047411	BAH and coiled-coil domain-containing protein 1, Tudor domain
Domain	IPR048924	BAHCC1-like, Tudor domain
Family	IPR052429	BAH domain-containing protein
Homologous_superfamily	IPR043151	Bromo adjacent homology (BAH) domain superfamily

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Domain Details Per Protein

Protein	Length	BAH and coiled-coil domain-containing protein 1, Tudor domain	BAHCC1-like, Tudor domain	BAH domain-containing protein	Bromo adjacent homology (BAH) domain	Bromo adjacent homology (BAH) domain superfamily
UniProtKB:A0A8M9QN20 InterPro	2687
UniProtKB:U3JAH0 InterPro	2688

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Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Genome Build: GRCz11Chromosome: 12

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	bahcc1b-201 (1) Ensembl	Ensembl	10,580 nt	Select Tool ZFIN BLAST
mRNA	bahcc1b-202 (1) Ensembl	Ensembl	127 nt	Select Tool ZFIN BLAST
mRNA	bahcc1b-203 (1) Ensembl	Ensembl	708 nt	Select Tool ZFIN BLAST
mRNA	bahcc1b-204 (1) Ensembl	Ensembl	412 nt	Select Tool ZFIN BLAST
mRNA	bahcc1b-205 (1) Ensembl	Ensembl	12,248 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH73-256H19	CU459169	ZFIN Curated Data
Contained in	BAC	DKEY-21C1	CR854979	ZFIN Curated Data
Contained in	BAC	DKEYP-92C5	CR932362	ZFIN Curated Data
Encodes	EST	IMAGE:7138780	CK677809	Thisse et al., 2004

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_009306821 (1)	10032 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR854979 (1)	207513 nt	Select Tool MegaBLAST
Polypeptide	UniProtKB:U3JAH0 (1)	2688 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance

Species	Symbol	Chromosome	Accession #	Evidence
Human	BAHCC1	17	Ensembl:ENSG00000266074 Ensembl:ENSG00000291421 Gene:57597 OMIM:617646 HGNC:29279	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)
Mouse	Bahcc1	11	Ensembl:ENSMUSG00000039741 MGI:2679272 Gene:268515	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)

Citations

Include unpublished citations

Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549

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