Gene

edil3b

ID

ZDB-GENE-090312-42

Name

EGF-like repeats and discoidin I-like domains 3b

Symbol

edil3b Nomenclature History

Previous Names

si:dkey-169a9.1

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity and integrin binding activity. Orthologous to human EDIL3 (EGF like repeats and discoidin domains 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With edil3b Human Ortholog

No data available

Associated With edil3b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018097	EGF-like calcium-binding, conserved site
Domain	IPR000421	Coagulation factor 5/8, C-terminal domain
Domain	IPR000742	EGF-like domain
Domain	IPR001881	EGF-like calcium-binding domain
Family	IPR050633	Neuropilin/Multicopper Oxidase/Coagulation Factor
Homologous_superfamily	IPR008979	Galactose-binding-like domain superfamily
PTM	IPR000152	EGF-type aspartate/asparagine hydroxylation site

Domain Details Per Protein

Protein	Length	Coagulation factor 5/8, C-terminal domain	EGF-like calcium-binding, conserved site	EGF-like calcium-binding domain	EGF-like domain	EGF-type aspartate/asparagine hydroxylation site	Galactose-binding-like domain superfamily	Neuropilin/Multicopper Oxidase/Coagulation Factor
UniProtKB:A0A8M9Q6S2 InterPro	420
UniProtKB:F1Q6J1 InterPro	463
UniProtKB:A0A8M9QCR5 InterPro	419
UniProtKB:A0A8M3AX79 InterPro	462

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	edil3b-201 (1) Ensembl	Ensembl	1,546 nt	Select Tool ZFIN BLAST
mRNA	edil3b-202 (1) Ensembl	Ensembl	1,155 nt	Select Tool
mRNA	edil3b-203 (1) Ensembl	Ensembl	1,604 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations