Gene

rasef

ID
ZDB-GENE-081105-157
Name
RAS and EF-hand domain containing
Symbol
rasef Nomenclature History
Previous Names
  • si:ch73-275j21.1 (1)
Type
protein_coding_gene
Location
Chr: 8 Mapping Details/Browsers
Description
Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Orthologous to human RASEF (RAS and EF-hand domain containing).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ihb736Allele with one deletionExon 12UnknownCRISPR
China Zebrafish Resource Center (CZRC) (order this)
sa21388Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-rasefZebrafish Nomenclature Committee
1 - 1 of 1
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Human Disease
Associated With rasef Human Ortholog
No data available
Associated With rasef Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Binding_site IPR018247 EF-Hand 1, calcium-binding site
Domain IPR002048 EF-hand domain
Domain IPR005225 Small GTP-binding domain
Family IPR001806 Small GTPase
Family IPR050227 Ras-related protein Rab
1 - 5 of 7 Show all
Domain Details Per Protein
Protein Length EF-Hand 1, calcium-binding site EF-hand domain EF-hand domain pair P-loop containing nucleoside triphosphate hydrolase Ras-related protein Rab Small GTPase Small GTP-binding domain
UniProtKB:B8JLE6
InterPro
706
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 8
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA rasef-201 (1)
Ensembl
Ensembl 2,265 nt
ZFIN BLAST
mRNA rasef-202 (1)
Ensembl
Ensembl 1,956 nt
ZFIN BLAST
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-275J21ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_694243 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:BX957316 (1)144967 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:B8JLE6 (1)706 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanRASEF9
Amino acid sequence comparison (1)
MouseRasef4
Amino acid sequence comparison (1)
Citations
TSV
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