Gene

brpf3b

ID

ZDB-GENE-081104-468

Name

bromodomain and PHD finger containing, 3b

Symbol

brpf3b Nomenclature History

Previous Names

brpf3
si:dkeyp-46c9.4

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have metal ion binding activity. Orthologous to human BRPF3 (bromodomain and PHD finger containing 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With brpf3b Human Ortholog

No data available

Associated With brpf3b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018359	Bromodomain, conserved site
Conserved_site	IPR019786	Zinc finger, PHD-type, conserved site
Domain	IPR000313	PWWP domain
Domain	IPR001487	Bromodomain
Domain	IPR001965	Zinc finger, PHD-type
Domain	IPR019542	Enhancer of polycomb-like, N-terminal
Domain	IPR019787	Zinc finger, PHD-finger
Domain	IPR034732	Extended PHD (ePHD) domain
Family	IPR050701	Histone Modification Regulator
Homologous_superfamily	IPR011011	Zinc finger, FYVE/PHD-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR036427	Bromodomain-like superfamily

Domain Details Per Protein

Protein	Length	Bromodomain	Bromodomain, conserved site	Bromodomain-like superfamily	Enhancer of polycomb-like, N-terminal	Extended PHD (ePHD) domain	Histone Modification Regulator	PWWP domain	Zinc finger, FYVE/PHD-type	Zinc finger, PHD-finger	Zinc finger, PHD-type	Zinc finger, PHD-type, conserved site	Zinc finger, RING/FYVE/PHD-type
UniProtKB:F6P390 InterPro	1222

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	brpf3b-201 (1) Ensembl	Ensembl		4,227 nt	Select Tool
mRNA	brpf3b-202 (1) Ensembl	Ensembl		3,651 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations