Gene

cadm1b

ID

ZDB-GENE-080327-34

Name

cell adhesion molecule 1b

Symbol

cadm1b Nomenclature History

Previous Names

sc:d0664

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Predicted to have cholesterol 24-hydroxylase activity and heme binding activity. Predicted to be involved in cholesterol catabolic process. Predicted to localize to integral component of membrane. Human ortholog(s) of this gene implicated in breast carcinoma and prostate cancer. Is expressed in cleithrum; immature eye; and nervous system. Orthologous to human CADM1 (cell adhesion molecule 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

10 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

cssl:d0664 (13 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from Charlton-Perkins et al., 2019
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cadm1b Human Ortholog

No data available

Associated With cadm1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003585	Neurexin/syndecan/glycophorin C
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin subtype
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013106	Immunoglobulin V-set domain
Domain	IPR013162	CD80-like, immunoglobulin C2-set
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	CD80-like, immunoglobulin C2-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype	Immunoglobulin subtype 2	Immunoglobulin V-set domain	Neurexin/syndecan/glycophorin C
UniProtKB:B0F6R1 InterPro	411

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	cadm1b-201 (1) Ensembl	Havana	2332 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	cadm1b-002 (1) Ensembl	Havana	952 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations