Gene

lrch3

ID

ZDB-GENE-071004-44

Name

leucine-rich repeats and calponin homology (CH) domain containing 3

Symbol

lrch3 Nomenclature History

Previous Names

zgc:171915 (1)

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Description

Predicted to localize to cytosol. Orthologous to human LRCH3 (leucine rich repeats and calponin homology domain containing 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lrch3 Human Ortholog

No data available

Associated With lrch3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001715	Calponin homology domain
Family	IPR050216	Leucine-rich repeat domain-containing protein
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Homologous_superfamily	IPR036872	CH domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype

Domain Details Per Protein

Protein	Length	Calponin homology domain	CH domain superfamily	Leucine-rich repeat	Leucine-rich repeat domain-containing protein	Leucine-rich repeat domain superfamily	Leucine-rich repeat, typical subtype
UniProtKB:A0A8M2BKV2 InterPro	794
UniProtKB:A0A286YBW2 InterPro	779
UniProtKB:A0A8M1RFJ0 InterPro	743
UniProtKB:A0A8M2BL84 InterPro	767
UniProtKB:A0A8M3ARR7 InterPro	725
UniProtKB:A0A8M6YTK7 InterPro	776

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	lrch3-201 (1) Ensembl	Ensembl	1,672 nt	Select Tool
mRNA	lrch3-202 (1) Ensembl	Ensembl	640 nt	Select Tool
mRNA	lrch3-203 (1) Ensembl	Ensembl	2,471 nt	Select Tool
mRNA	lrch3-204 (1) Ensembl	Ensembl	2,356 nt	Select Tool ZFIN BLAST
mRNA	lrch3-205 (1) Ensembl	Ensembl	1,314 nt	Select Tool
mRNA	lrch3-206 (1) Ensembl	Ensembl	2,437 nt	Select Tool ZFIN BLAST
mRNA	lrch3-207 (1) Ensembl	Ensembl	2,284 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations