Gene

ppfia4

ID

ZDB-GENE-070720-14

Name

PTPRF interacting protein alpha 4

Symbol

ppfia4 Nomenclature History

Previous Names

zgc:165463

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to be involved in synapse organization. Predicted to localize to presynaptic active zone. Orthologous to human PPFIA4 (PTPRF interacting protein alpha 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ppfia4 Human Ortholog

No data available

Associated With ppfia4 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001660	Sterile alpha motif domain
Domain	IPR037620	Liprin-alpha, SAM domain repeat 1
Domain	IPR037621	Liprin-alpha, SAM domain repeat 2
Domain	IPR037622	Liprin-alpha, SAM domain repeat 3
Family	IPR029515	LAR-interacting protein, Liprin
Homologous_superfamily	IPR013761	Sterile alpha motif/pointed domain superfamily

Domain Details Per Protein

Protein	Length	LAR-interacting protein, Liprin	Liprin-alpha, SAM domain repeat 1	Liprin-alpha, SAM domain repeat 2	Liprin-alpha, SAM domain repeat 3	Sterile alpha motif domain	Sterile alpha motif/pointed domain superfamily
UniProtKB:A0A8M3B6V6 InterPro	1213
UniProtKB:A0A8M9QHG8 InterPro	1209
UniProtKB:B0S6H8 InterPro	1211
UniProtKB:A0A8M9QLF9 InterPro	1212
UniProtKB:A0A8M3B411 InterPro	1206
UniProtKB:A0A8M9PUM9 InterPro	1209
UniProtKB:A0A8M6Z101 InterPro	1197
UniProtKB:A0A8M3AXL8 InterPro	1201
UniProtKB:A0A8M9Q6Z6 InterPro	1204

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ppfia4-201 (1) Ensembl	Ensembl	4,368 nt	Select Tool ZFIN BLAST
mRNA	ppfia4-202 (1) Ensembl	Ensembl	4,331 nt	Select Tool ZFIN BLAST
mRNA	ppfia4-203 (1) Ensembl	Ensembl	4,367 nt	Select Tool ZFIN BLAST
mRNA	ppfia4-204 (1) Ensembl	Ensembl	2,768 nt	Select Tool ZFIN BLAST
mRNA	ppfia4-205 (1) Ensembl	Ensembl	6,785 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations