Gene

lrfn4b

ID

ZDB-GENE-070705-473

Name

leucine rich repeat and fibronectin type III domain containing 4b

Symbol

lrfn4b Nomenclature History

Previous Names

si:dkey-46d17.3

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to be involved in regulation of postsynaptic density assembly; regulation of presynapse assembly; and synaptic membrane adhesion. Predicted to localize to cell surface; glutamatergic synapse; and integral component of postsynaptic density membrane. Orthologous to human LRFN4 (leucine rich repeat and fibronectin type III domain containing 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lrfn4b Human Ortholog

No data available

Associated With lrfn4b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000477	Reverse transcriptase domain
Domain	IPR041373	Reverse transcriptase, RNase H-like domain
Family	IPR053134	RNA-directed DNA polymerase homolog
Homologous_superfamily	IPR021109	Aspartic peptidase domain superfamily
Homologous_superfamily	IPR043128	Reverse transcriptase/Diguanylate cyclase domain
Homologous_superfamily	IPR043502	DNA/RNA polymerase superfamily

Domain Details Per Protein

Protein	Length	Aspartic peptidase domain superfamily	DNA/RNA polymerase superfamily	Reverse transcriptase/Diguanylate cyclase domain	Reverse transcriptase domain	Reverse transcriptase, RNase H-like domain	RNA-directed DNA polymerase homolog
UniProtKB:A0A8M9PQJ4 InterPro	735

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	lrfn4b-201 (1) Ensembl	Ensembl		3,298 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations