Gene

nkapd1

ID

ZDB-GENE-070410-76

Name

NKAP domain containing 1

Symbol

nkapd1 Nomenclature History

Previous Names

zgc:162339

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Orthologous to human NKAPD1 (NKAP domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With nkapd1 Human Ortholog

No data available

Associated With nkapd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR043407	Nkap domain containing 1

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Domain Details Per Protein

Protein	Length	Nkap domain containing 1
UniProtKB:A4QNY5 InterPro	255

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Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 15

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:162339-202 (1) Ensembl	Ensembl	2,421 nt	Select Tool ZFIN BLAST
mRNA	zgc:162339-203 (1) Ensembl	Ensembl	805 nt	Select Tool ZFIN BLAST
mRNA	zgc:162339-205 (1) Ensembl	Ensembl	5,133 nt	Select Tool ZFIN BLAST
ncRNA	zgc:162339-002 (1) Ensembl	Ensembl	923 nt	Select Tool ZFIN BLAST
ncRNA	zgc:162339-003 (1) Ensembl	Ensembl	749 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	DKEY-40G16	BX572648	ZFIN Curated Data
Encodes	cDNA	MGC:162339	BC139569	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001160409 (1)	1311 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX572648 (1)	180747 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A4QNY5 (1)	255 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	NKAPD1	11	Ensembl:ENSG00000150776 Gene:55216 HGNC:25569	Conserved genome location (synteny) (1) Amino acid sequence comparison (1)
Mouse	Nkapd1	9	Ensembl:ENSMUSG00000059820 MGI:2143205 Gene:270156	Conserved genome location (synteny) (1) Amino acid sequence comparison (1)

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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