Gene

egfem1

ID

ZDB-GENE-070112-1202

Name

EGF-like and EMI domain containing 1

Symbol

egfem1 Nomenclature History

Previous Names

megf6 (1)
zgc:158328

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With egfem1 Human Ortholog

No data available

Associated With egfem1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018097	EGF-like calcium-binding, conserved site
Domain	IPR000742	EGF-like domain
Domain	IPR001881	EGF-like calcium-binding domain
Domain	IPR002049	Laminin-type EGF domain
Domain	IPR011489	EMI domain
Domain	IPR049883	NOTCH1 EGF-like calcium-binding domain
Family	IPR052108	Multiple EGF-like domains/Integrin beta-like
Homologous_superfamily	IPR009030	Growth factor receptor cysteine-rich domain superfamily
PTM	IPR000152	EGF-type aspartate/asparagine hydroxylation site

Domain Details Per Protein

Protein	Length	EGF-like calcium-binding, conserved site	EGF-like calcium-binding domain	EGF-like domain	EGF-type aspartate/asparagine hydroxylation site	EMI domain	Growth factor receptor cysteine-rich domain superfamily	Laminin-type EGF domain	Multiple EGF-like domains/Integrin beta-like	NOTCH1 EGF-like calcium-binding domain
UniProtKB:A1L1T4 InterPro	1339

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	zgc:158328-201 (1) Ensembl	Ensembl		2,703 nt	Select Tool
mRNA	zgc:158328-204 (1) Ensembl	Ensembl		2,538 nt	Select Tool ZFIN BLAST
ncRNA	zgc:158328-002 (1) Ensembl	Ensembl		790 nt	Select Tool
ncRNA	zgc:158328-003 (1) Ensembl	Ensembl		649 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations