ZFIN is now using GRCz12tu for Genomic Data
Gene
ptpn23b
- ID
- ZDB-GENE-060503-179
- Name
- protein tyrosine phosphatase, non-receptor type 23, b
- Symbol
- ptpn23b Nomenclature History
- Previous Names
-
- ptpn23
- si:dkeyp-114f9.2
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in early endosome to late endosome transport; endocytic recycling; and protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be located in cytoplasm. Predicted to be active in endosome. Orthologous to human PTPN23 (protein tyrosine phosphatase non-receptor type 23).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from van Eekelen et al., 2010
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Neurodevelopmental disorder and structural brain anomalies with or without seizures and spasticity | 618890 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | ALIX V-shaped domain | BRO1 domain | BRO1 domain superfamily |
|---|---|---|---|---|---|
| UniProtKB:A0A2R8QCR7 | InterPro | 1229 | |||
| UniProtKB:B7ZV28 | InterPro | 1215 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ptpn23b-201
(1)
|
Ensembl | 3,947 nt | ||
| mRNA |
ptpn23b-202
(1)
|
Ensembl | 3,980 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers