Gene

rbm26

ID

ZDB-GENE-050706-50

Name

RNA binding motif protein 26

Symbol

rbm26 Nomenclature History

Previous Names

fc66d05
wu:fc66d05
zgc:109736

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to enable RNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM26 (RNA binding motif protein 26).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa1169	Allele with one point mutation	Unknown	Premature Stop	ENU
sa18577	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa31496	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)
sa40628	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)

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Sequence Targeting Reagents

No data available

Human Disease

Associated With rbm26 Human Ortholog

No data available

Associated With rbm26 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR000571	Zinc finger, CCCH-type
Domain	IPR002483	PWI domain
Domain	IPR039511	RBM26-like, RNA recognition motif 2
Family	IPR045137	RNA-binding protein 26/27
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Nucleotide-binding alpha-beta plait domain superfamily	PWI domain	RBM26-like, RNA recognition motif 2	RNA-binding domain superfamily	RNA-binding protein 26/27	RNA recognition motif domain	Zinc finger, CCCH-type
UniProtKB:A0A0R4IYE4	InterPro	1007

Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 6

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbm26-201 (1) Ensembl	Ensembl	3,916 nt	Select Tool ZFIN BLAST
mRNA	rbm26-202 (1) Ensembl	Ensembl	2,069 nt	Select Tool ZFIN BLAST
mRNA	rbm26-203 (1) Ensembl	Ensembl	6,234 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH211-79H15	CU693471	ZFIN Curated Data
Encodes	EST	fc66d05	AI878772 AI883574
Encodes	cDNA	MGC:109736	BC098517	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001033588 (1)	2117 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU693471 (2)	142870 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A0R4IYE4 (1)	1007 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	RBM26	13	Ensembl:ENSG00000139746 Gene:64062 HGNC:20327 OMIM:620081	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)
Mouse	Rbm26	14	Ensembl:ENSMUSG00000022119 Gene:74213 MGI:1921463	Conserved genome location (synteny) (1) Amino acid sequence comparison (1)

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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