Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-050522-559
Gene Name: cathepsin Sb, tandem duplicate 1
Gene Symbol: ctssb.1
Previous Names: fc38f10, fc47h06, zf-a41, im:6797184, ns:zf-a41, wu:fc38f10, wu:fc47h06, wu:fi17f10, zgc:112226, zgc:112369, zgc:123302
Location: Chr: 16   Details
Nomenclature History
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS No data available
PHENOTYPE No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process proteolysis (more)
Molecular Function cysteine-type peptidase activity (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000169 (1)
  • InterPro:IPR000668 (1)
  • InterPro:IPR013128 (1)
  • InterPro:IPR013201 (1)
  • InterPro:IPR025660 (1)
  • InterPro:IPR025661 (1)
  • PROSITE:PS00139 (1)
  • PROSITE:PS00639 (1)
  • PROSITE:PS00640 (1)
  • Pfam:PF00112 (1)
  • Pfam:PF08246 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ctssb.1-001 (1) 1227
    ncRNA ctssb.1-002 (1) 803
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM ctssb.1 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    ctssb.1 Contained in: [BAC] CH211-113G11 (1) (order this), DKEY-30O16 (1)
    ctssb.1 Contains: [SNP] rs3728791 (1), rs3728792 (1), rs3728793 (1), rs3728794 (1), rs3728795 (1), rs3728796 (1), rs3728797 (1)
    ctssb.1 Encodes: [EST] fc38f10, fc47h06, fi17f10 (1), IMAGE:6797184 (1), zf-a41
    [cDNA] MGC:112226 (1), MGC:112369 (1) (order this), MGC:123302 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001024409 (1) 1244 bp
    Genomic GenBank:BX248517 (1) 201353 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q502A6 (1) 330 aa
    Sequence Clusters UniGene:75553 (1)
    Sequence Information (all 30)
    OTHER ctssb.1 GENE PAGES
  • Gene:554157 (1)
  • VEGA:OTTDARG00000034140 (1)
  • Ensembl(Zv9):ENSDARG00000074656 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish ctssb.1 16  
    Human CTSS 1 (1q21)
  • OMIM:116845
  • Gene:1520
  • Mouse Ctss 3 ( 40.74 cM)
  • MGI:107341
  • Gene:13040
  • Orthology Details
    Orthology Note
    CITATIONS (19)