Gene

prdm10

ID

ZDB-GENE-050419-74

Name

PR domain containing 10

Symbol

prdm10 Nomenclature History

Previous Names

si:ch211-151h10.3

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Description

Predicted to enable DNA binding activity; metal ion binding activity; and methyltransferase activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within methylation. Predicted to be active in nucleus. Orthologous to human PRDM10 (PR/SET domain 10).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With prdm10 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		?Birt-Hogg-Dube syndrome 2	620459

Associated With prdm10 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001214	SET domain
Domain	IPR013087	Zinc finger C2H2-type
Domain	IPR044403	PRDM10, PR/SET domain
Family	IPR050688	Zinc finger and ubiquitin peptidase domain-containing protein
Homologous_superfamily	IPR036236	Zinc finger C2H2 superfamily
Homologous_superfamily	IPR046341	SET domain superfamily

Domain Details Per Protein

Protein	Length	PRDM10, PR/SET domain	SET domain	SET domain superfamily	Zinc finger and ubiquitin peptidase domain-containing protein	Zinc finger C2H2 superfamily	Zinc finger C2H2-type
UniProtKB:A0A8M3AV43 InterPro	1180
UniProtKB:A0A0R4IF41 InterPro	1176
UniProtKB:A2BID7 InterPro	1121

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	prdm10-201 (1) Ensembl	Ensembl	5,489 nt	Select Tool ZFIN BLAST
mRNA	prdm10-202 (1) Ensembl	Ensembl	723 nt	Select Tool ZFIN BLAST
mRNA	prdm10-203 (1) Ensembl	Ensembl	5,967 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations