Gene

atpsckmt

ID

ZDB-GENE-041114-90

Name

fATP synthase c subunit lysine N-methyltransferase

Symbol

atpsckmt Nomenclature History

Previous Names

fam173b
zgc:103579

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in positive regulation of sensory perception of pain and regulation of mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within methylation. Predicted to be located in membrane. Predicted to be active in mitochondrion. Orthologous to human ATPSCKMT (ATP synthase c subunit lysine N-methyltransferase).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:6907989 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With atpsckmt Human Ortholog

No data available

Associated With atpsckmt Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR026170	N-lysine methyltransferase FAM173A/B
Homologous_superfamily	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:E7EXV0	InterPro	224
UniProtKB:E9QHP4	InterPro	164
UniProtKB:F1QDF7	InterPro	159

Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 2

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	fam173b-201 (1) Ensembl	Ensembl	1,032 nt	Select Tool ZFIN BLAST
mRNA	fam173b-202 (1) Ensembl	Ensembl	815 nt	Select Tool ZFIN BLAST
mRNA	fam173b-203 (1) Ensembl	Ensembl	921 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	DKEY-40C17	CR388419	ZFIN Curated Data
Encodes	EST	IMAGE:6907989	CB364521	Thisse et al., 2004
Encodes	cDNA	MGC:103579	BC085559	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001291706 (1)	1237 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR388419 (1)	128710 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:E7EXV0 (1)	224 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	ATPSCKMT	5	Ensembl:ENSG00000150756 Gene:134145 HGNC:27029 OMIM:618568	Conserved genome location (synteny) (1) Amino acid sequence comparison (1)

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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