ZFIN ID: ZDB-GENE-041014-332
Gene Name: LIM homeobox transcription factor 1, alpha
Gene Symbol: lmx1a

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Previous Name: si:ch211-260g14.3

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Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. 1 from Burzynski et al., 2013
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
  brain, cranial ganglion, diencephalon, otic vesicle (all 6) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1653 Point Mutation Unknown Splice Site ENU
sa9422 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32304 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa37086 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lmx1a HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001781 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF00412 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lmx1a-001 (1) 1374
    lmx1a-002 (1) 534
    lmx1a-003 (1) 615
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lmx1a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    lmx1aContained in: [BAC] CH211-260G14 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001025498 (1) 1374bp
    Genomic GenBank:BX296562 (1) 129328bp
    Select Tool
    Polypeptide UniProtKB:Q5RI65 (1) 366aa
    Sequence Clusters UniGene:108111 (1)
    Sequence Information (all 15)
    OTHER lmx1a GENE PAGES
  • Gene:558036 (1)
  • VEGA:OTTDARG00000006141 (1)
  • Ensembl(GRCz10):ENSDARG00000020354 (1)
  • ORTHOLOGY for lmx1a (Chr: 20)
    CITATIONS (16)