Gene
gpatch1
- ID
- ZDB-GENE-040914-65
- Name
- G patch domain containing 1
- Symbol
- gpatch1 Nomenclature History
- Previous Names
-
- im:7135982
- wu:fc11h11
- wu:fj99h08
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Description
- Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7135982 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | G-patch domain | G patch domain-containing protein, N-terminal |
|---|---|---|---|---|
| UniProtKB:A0JMC1 | InterPro | 924 | ||
| UniProtKB:G1K2G6 | InterPro | 975 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
gpatch1-201
(1)
|
Ensembl | 3,161 nt | ||
| mRNA |
gpatch1-203
(1)
|
Ensembl | 293 nt | ||
| ncRNA |
gpatch1-002
(1)
|
Ensembl | 742 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-78A14 | ZFIN Curated Data | |
| Encodes | EST | fc11h11 | ZFIN Curated Data | |
| Encodes | EST | fj99h08 | ZFIN Curated Data | |
| Encodes | EST | IMAGE:7135982 | Thisse et al., 2004 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001204123 (1) | 3163 nt | ||
| Genomic | GenBank:BX323797 (1) | 101349 nt | ||
| Polypeptide | UniProtKB:G1K2G6 (1) | 975 aa |
- Ellingsen, S., Narawane, S., Fjose, A., Verri, T., Rønnestad, I. (2021) The zebrafish cationic amino acid transporter/glycoprotein-associated family: sequence and spatiotemporal distribution during development of the transport system b0,+ (slc3a1/slc7a9). Fish physiology and biochemistry. 47(5):1507-1525
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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