Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-040912-78
Gene Name: transglutaminase 2, C polypeptide A
Gene Symbol: tgm2a
Previous Names: TG2c (1), tgm2, zgc:101081
Location: Chr: 23   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 9 figures from 2 publications
Directly Submitted Expression Data: 3 figures (2 images) from Thisse et al., 2004 [IMAGE:7137767]
  4 figures (3 images) from Thisse et al., 2004 [IMAGE:7146244]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Adult (90d-730d, breeding adult)
  muscle, myotome, somite, unspecified (all 5) expand
MUTANTS AND TARGETED KNOCKDOWNS No data available
PHENOTYPE No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process peptide cross-linking (more)
Cellular Component cellular_component (more)
Molecular Function metal ion binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001102 (1)
  • InterPro:IPR002931 (1)
  • InterPro:IPR008958 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR013808 (1)
  • InterPro:IPR014756 (1)
  • InterPro:IPR023608 (1)
  • PROSITE:PS00547 (1)
  • Pfam:PF00868 (1)
  • Pfam:PF00927 (1)
  • Pfam:PF01841 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA tgm2a-001 (1) 2120
    ncRNA tgm2a-002 (1) 976
    tgm2a-003 (1) 788
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM tgm2a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    tgm2a Contained in: [BAC] DKEY-65J6 (1)
    tgm2a Encodes: [EST] IMAGE:7137767 (1) (order this), IMAGE:7146244 (1) (order this)
    [cDNA] MGC:101081 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001004647 (1) 2101 bp
    Genomic GenBank:BX005287 (1) 140569 bp
    Select Tool
    Polypeptide UniProtKB:F1R1A8 (1) 679 aa
    Sequence Clusters UniGene:88666 (1)
    Sequence Information (all 11)
    OTHER tgm2a GENE PAGES
  • Gene:447909 (1)
  • VEGA:OTTDARG00000021949 (1)
  • Ensembl(Zv9):ENSDARG00000070157 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish tgm2a 23  
    Human TGM2 20 (20q12)
  • OMIM:190196
  • Gene:7052
  • Mouse Tgm2 2 ( 78.72 cM)
  • MGI:98731
  • Gene:21817
  • Orthology Details
    CITATIONS (14)