Gene

csdc2a

ID
ZDB-GENE-040718-442
Name
cold shock domain containing C2, RNA binding a
Symbol
csdc2a Nomenclature History
Previous Names
  • csdc2
  • zgc:91826
Type
protein_coding_gene
Location
Chr: 12 Mapping Details/Browsers
Description
Predicted to have mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to localize to cytoplasm. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human CSDC2 (cold shock domain containing C2).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
5 figures from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
No data available
Human Disease
Associated With csdc2a Human Ortholog
No data available
Associated With csdc2a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR019844 Cold-shock domain, conserved site
Domain IPR002059 Cold-shock protein Csp, DNA-binding
Domain IPR011129 Cold-shock domain
Family IPR052069 Calcium-regulated mRNA-binding domain-containing protein
Homologous_superfamily IPR012340 Nucleic acid-binding, OB-fold
1 - 5 of 5
Domain Details Per Protein
Protein Length Calcium-regulated mRNA-binding domain-containing protein Cold-shock domain Cold-shock domain, conserved site Cold-shock protein Csp, DNA-binding Nucleic acid-binding, OB-fold
UniProtKB:Q6DGA4 153
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 12
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA csdc2a-201 (1) Ensembl 1,348 nt
mRNA csdc2a-202 (1) Ensembl 478 nt
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-139E5
EncodesESTIMAGE:7141292Thisse et al., 2004
EncodescDNAMGC:91826ZFIN Curated Data
EncodescDNAMGC:192078ZFIN Curated Data
1 - 4 of 4
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanCSDC222
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MouseCsdc215
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
1 - 3 of 3
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