Gene

lemd1

ID

ZDB-GENE-040718-350

Name

LEM domain containing 1

Symbol

lemd1 Nomenclature History

Previous Names

zgc:92287

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Predicted to have DNA binding activity. Predicted to localize to integral component of membrane. Is expressed in hindbrain; musculature system; myotome; and pectoral fin musculature.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:92287 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lemd1 Human Ortholog

No data available

Associated With lemd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003887	LEM domain
Domain	IPR013146	LEM-like domain
Family	IPR051656	LEM domain-containing
Homologous_superfamily	IPR011015	LEM/LEM-like domain superfamily

Domain Details Per Protein

Protein	Length	LEM domain	LEM domain-containing	LEM/LEM-like domain superfamily	LEM-like domain
UniProtKB:A0A8M6YV85 InterPro	279
UniProtKB:A0A8M2B8Y3 InterPro	314
UniProtKB:A0A8M2B8W2 InterPro	242
UniProtKB:A0A8M2B8V4 InterPro	392
UniProtKB:Q6DHI6 InterPro	285
UniProtKB:A0A8M2B8V9 InterPro	213
UniProtKB:A0A8M2B903 InterPro	376
UniProtKB:A0A8M6Z3Q3 InterPro	393
UniProtKB:A0A8M9PWF4 InterPro	340
UniProtKB:A0A8M9PKP3 InterPro	399
UniProtKB:A0A8M9PF05 InterPro	230
UniProtKB:A0A8M9PT08 InterPro	339
UniProtKB:A0A8M3AV65 InterPro	346
UniProtKB:A0A8M6YVU6 InterPro	370
UniProtKB:A0A8M9P530 InterPro	308
UniProtKB:A0A8M6YXP2 InterPro	327

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:92287-201 (1) Ensembl	Ensembl	1,476 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-202 (1) Ensembl	Ensembl	871 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-203 (1) Ensembl	Ensembl	1,021 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-204 (1) Ensembl	Ensembl	804 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-205 (1) Ensembl	Ensembl	785 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-206 (1) Ensembl	Ensembl	854 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-207 (1) Ensembl	Ensembl	975 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-209 (1) Ensembl	Ensembl	796 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-210 (1) Ensembl	Ensembl	778 nt	Select Tool ZFIN BLAST
ncRNA	zgc:92287-006 (1) Ensembl	Ensembl	650 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations