Gene

atg4c

ID

ZDB-GENE-040625-84

Name

autophagy related 4C, cysteine peptidase

Symbol

atg4c Nomenclature History

Previous Names

apg4c (1)
atg4cl (1)
wu:fc56g07
zgc:86888

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have cysteine-type endopeptidase activity. Predicted to be involved in autophagy; protein transport; and proteolysis. Predicted to localize to cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With atg4c Human Ortholog

No data available

Associated With atg4c Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR046792	Peptidase C54, catalytic domain
Family	IPR005078	Peptidase C54
Homologous_superfamily	IPR038765	Papain-like cysteine peptidase superfamily

Domain Details Per Protein

Protein	Length	Papain-like cysteine peptidase superfamily	Peptidase C54	Peptidase C54, catalytic domain
UniProtKB:Q6IQ96 InterPro	463
UniProtKB:A0A8M9PM06 InterPro	381

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	atg4c-201 (1) Ensembl	Ensembl	3,011 nt	Select Tool
mRNA	atg4c-202 (1) Ensembl	Ensembl	4,077 nt	Select Tool ZFIN BLAST
ncRNA	atg4c-002 (1) Ensembl	Ensembl	734 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations