Gene

tdrd3

ID

ZDB-GENE-040426-19

Name

tudor domain containing 3

Symbol

tdrd3 Nomenclature History

Previous Names

zgc:77174 (1)

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to have chromatin binding activity; methylated histone binding activity; and transcription coactivator activity. Predicted to be involved in chromatin organization and mRNA processing. Predicted to colocalize with exon-exon junction complex. Orthologous to human TDRD3 (tudor domain containing 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tdrd3 Human Ortholog

No data available

Associated With tdrd3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR002999	Tudor domain
Domain	IPR013894	RecQ mediated genome instability protein 1, OB-fold domain
Domain	IPR015940	Ubiquitin-associated domain
Domain	IPR041915	Tudor domain-containing protein 3, UBA domain
Domain	IPR047379	Tudor domain-containing protein 3, Tudor domain
Homologous_superfamily	IPR009060	UBA-like superfamily
Homologous_superfamily	IPR042470	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily

Domain Details Per Protein

Protein	Length	RecQ mediated genome instability protein 1, OB-fold domain	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Tudor domain	Tudor domain-containing protein 3, Tudor domain	Tudor domain-containing protein 3, UBA domain	UBA-like superfamily	Ubiquitin-associated domain
UniProtKB:X1WG14 InterPro	733
UniProtKB:A0A8M9Q735 InterPro	610
UniProtKB:Q6NYG6 InterPro	733
UniProtKB:A0A2R8RPE6 InterPro	735
UniProtKB:A0A8M2BGT2 InterPro	701

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	tdrd3-201 (1) Ensembl	Ensembl	6,993 nt	Select Tool ZFIN BLAST
mRNA	tdrd3-202 (1) Ensembl	Ensembl	2,792 nt	Select Tool
mRNA	tdrd3-203 (1) Ensembl	Ensembl	6,996 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations