Gene

xrn1

ID
ZDB-GENE-040426-1203
Name
5'-3' exoribonuclease 1
Symbol
xrn1 Nomenclature History
Previous Names
  • wu:fk92c07
  • zgc:63635
Type
protein_coding_gene
Location
Chr: 2 Mapping Details/Browsers
Description
Predicted to have 5'-3' exonuclease activity and RNA binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process. Predicted to localize to cytoplasm. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human XRN1 (5'-3' exoribonuclease 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With xrn1 Human Ortholog
No data available
Associated With xrn1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR004859 Xrn1, N-terminal
Domain IPR040992 5'-3' exoribonuclease 1, D1 domain
Domain IPR041106 Exoribonuclease Xrn1, D2/D3 domain
Domain IPR041385 5'-3' exoribonuclease 1, SH3-like domain
Domain IPR041412 Xrn1, helical domain
Family IPR016494 5'-3' exoribonuclease 1
Family IPR027073 5'-3' exoribonuclease
Homologous_superfamily IPR047007 5'-3' exoribonuclease 1, D1 domain superfamily
Homologous_superfamily IPR047008 5'-3' exoribonuclease 1, SH3-like domain superfamily
Domain Details Per Protein
Protein Length 5'-3' exoribonuclease 5'-3' exoribonuclease 1 5'-3' exoribonuclease 1, D1 domain 5'-3' exoribonuclease 1, D1 domain superfamily 5'-3' exoribonuclease 1, SH3-like domain 5'-3' exoribonuclease 1, SH3-like domain superfamily Exoribonuclease Xrn1, D2/D3 domain Xrn1, helical domain Xrn1, N-terminal
UniProtKB:F1Q4U5 1697
UniProtKB:A0A8M2BAC4 1696
UniProtKB:A0A8M2BAQ6 1696
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations