Gene

gtf2f1

ID

ZDB-GENE-030131-4557

Name

general transcription factor IIF, polypeptide 1

Symbol

gtf2f1 Nomenclature History

Previous Names

fd13c08
wu:fd13c08
zgc:56155

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have DNA binding activity. Predicted to be involved in positive regulation of transcription elongation from RNA polymerase II promoter and transcription initiation from RNA polymerase II promoter. Predicted to localize to nucleus. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:6908715 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gtf2f1 Human Ortholog

No data available

Associated With gtf2f1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR008851	Transcription initiation factor IIF, alpha subunit
Homologous_superfamily	IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction
Homologous_superfamily	IPR036388	Winged helix-like DNA-binding domain superfamily
Homologous_superfamily	IPR036390	Winged helix DNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Transcription Factor IIF, Rap30/Rap74, interaction	Transcription initiation factor IIF, alpha subunit	Winged helix DNA-binding domain superfamily	Winged helix-like DNA-binding domain superfamily
UniProtKB:Q7ZV95 InterPro	443

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	gtf2f1-201 (1) Ensembl	Havana	2281 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	gtf2f1-205 (1) Ensembl	Havana	591 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	gtf2f1-206 (1) Ensembl	Havana	1036 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	gtf2f1-003 (1) Ensembl	Havana	785 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	gtf2f1-004 (1) Ensembl	Havana	624 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations