Gene
snrnp48
- ID
- ZDB-GENE-030131-4482
- Name
- small nuclear ribonucleoprotein 48 (U11/U12)
- Symbol
- snrnp48 Nomenclature History
- Previous Names
-
- fd10a06
- wu:fd10a06
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Description
- Predicted to enable metal ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7144375 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Pei et al., 2018
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain | UPF0224 (FAM112) RNA Processing | Zinc finger C2H2 superfamily |
|---|---|---|---|---|
|
UniProtKB:A0A0R4IMG9
|
333 | |||
|
UniProtKB:A0A8M9PM81
|
172 | |||
|
UniProtKB:A0A8M9PCY3
|
338 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
snrnp48-201
(1)
|
Ensembl | 1,213 nt | ||
| ncRNA |
snrnp48-002
(1)
|
Ensembl | 767 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-209J17 | ZFIN Curated Data | |
| Encodes | EST | fd10a06 | ||
| Encodes | EST | IMAGE:7144375 | Thisse et al., 2004 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001115142 (1) | 1219 nt | ||
| Genomic | GenBank:CT485618 (1) | 224177 nt | ||
| Polypeptide | UniProtKB:A0A8M9PCY3 (1) | 338 aa |
- Anticevic, I., Otten, C., Popovic, M. (2024) Tyrosyl-DNA phosphodiesterase 2 (Tdp2) repairs DNA-protein crosslinks and protects against double strand breaks in vivo. Frontiers in cell and developmental biology. 12:13945311394531
- Pei, W., Xu, L., Huang, S.C., Pettie, K., Idol, J., Rissone, A., Jimenez, E., Sinclair, J.W., Slevin, C., Varshney, G.K., Jones, M., Carrington, B., Bishop, K., Huang, H., Sood, R., Lin, S., Burgess, S.M. (2018) Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues. NPJ Regenerative medicine. 3:11
- Tallafuss, A., Hale, L.A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H. (2006) Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development. Gene expression patterns : GEP. 6(5):556-565
- Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314
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