Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-2576
Gene Name: transglutaminase 2b
Gene Symbol: tgm2b
Previous Names: fc12b04, wu:fc12b04, zgc:136700
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (1 image) from Thisse et al., 2005 [eu541]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
  notochord, whole organism
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: la015838Tg
PHENOTYPE No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process peptide cross-linking (more)
Molecular Function metal ion binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001102 (1)
  • InterPro:IPR002931 (1)
  • InterPro:IPR008958 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR014756 (1)
  • InterPro:IPR023608 (1)
  • Pfam:PF00868 (1)
  • Pfam:PF00927 (1)
  • Pfam:PF01841 (1)
  • EC:2.3.2.13 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA tgm2b-001 (1) 1648
    ncRNA tgm2b-002 (1) 1366
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM tgm2b No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    tgm2b Contained in: [Fosmid] CH1073-441C13 (1) (order this)
    tgm2b Encodes: [EST] eu541 (1), fc12b04
    [cDNA] MGC:136700 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212656 (1) 2479 bp
    Genomic GenBank:CU634004 (1) 34760 bp
    Select Tool
    Polypeptide UniProtKB:Q1ECX3 (1) 679 aa
    Sequence Clusters UniGene:16524 (1)
    Sequence Information (all 19)
    OTHER tgm2b GENE PAGES
  • Gene:323856 (1)
  • VEGA:OTTDARG00000034659 (1)
  • Ensembl(Zv9):ENSDARG00000074094 (1)
  • MAPPING INFORMATION
    Chr: 6 Details
    ORTHOLOGY
      Evidence
    Species Symbol Chromosome (Position) Accession # AA CL
    Zebrafish tgm2b 6  
    Human TGM2 20 (20q12)
  • OMIM:190196
  • Gene:7052
  • Mouse Tgm2 2 ( 78.72 cM)
  • MGI:98731
  • Gene:21817
  • CITATIONS (19)