Gene

pbrm1l

ID

ZDB-GENE-010501-3

Name

polybromo 1, like

Symbol

pbrm1l Nomenclature History

Previous Names

pb1 (1)
zgc:100857
zgc:113882

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to contribute to DNA translocase activity. Predicted to be involved in ATP-dependent chromatin remodeling; nucleosome disassembly; and transcription elongation from RNA polymerase II promoter. Predicted to localize to RSC-type complex.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2005

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu469 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pbrm1l Human Ortholog

No data available

Associated With pbrm1l Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018359	Bromodomain, conserved site
Domain	IPR001025	Bromo adjacent homology (BAH) domain
Domain	IPR001487	Bromodomain
Domain	IPR009071	High mobility group box domain
Domain	IPR037968	Protein polybromo-1, Bromodomain 5
Family	IPR037382	Remodelling complex subunit Rsc/polybromo
Homologous_superfamily	IPR036427	Bromodomain-like superfamily
Homologous_superfamily	IPR036910	High mobility group box domain superfamily
Homologous_superfamily	IPR043151	Bromo adjacent homology (BAH) domain superfamily

Domain Details Per Protein

Protein	Length	Bromo adjacent homology (BAH) domain	Bromo adjacent homology (BAH) domain superfamily	Bromodomain	Bromodomain, conserved site	Bromodomain-like superfamily	High mobility group box domain	High mobility group box domain superfamily	Protein polybromo-1, Bromodomain 5	Remodelling complex subunit Rsc/polybromo
UniProtKB:E7EZ71 InterPro	1587
UniProtKB:A0A8M2BG23 InterPro	1657

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	pbrm1l-201 (1) Ensembl	Ensembl	5,481 nt	Select Tool ZFIN BLAST
mRNA	pbrm1l-202 (1) Ensembl	Ensembl	5,449 nt	Select Tool
mRNA	pbrm1l-203 (1) Ensembl	Ensembl	5,611 nt	Select Tool
mRNA	pbrm1l-206 (1) Ensembl	Ensembl	1,475 nt	Select Tool ZFIN BLAST
ncRNA	pbrm1l-003 (1) Ensembl	Ensembl	767 nt	Select Tool
ncRNA	pbrm1l-005 (1) Ensembl	Ensembl	754 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations