Gene

plrdgb

ID
ZDB-GENE-000406-3
Name
PITP-less RdgB-like protein
Symbol
plrdgb Nomenclature History
Previous Names
  • si:ch1073-443k13.2
  • zmp:0000000523
Type
protein_coding_gene
Location
Chr: 21 Mapping Details/Browsers
Description
Predicted to enable metal ion binding activity and phospholipid transporter activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in endomembrane system. Human ortholog(s) of this gene implicated in cone-rod dystrophy 5. Orthologous to human PITPNM3 (PITPNM family member 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
6 figures from Thisse et al., 2005
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa14941Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa39344Allele with one point mutationUnknownUnknownENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa39345Allele with one point mutationUnknownUnknownENU
Zebrafish International Resource Center (ZIRC) (order this)
sa43707Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With plrdgb Human Ortholog
No data available
Associated With plrdgb Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR004177 DDHD domain
Domain IPR031315 LNS2/PITP
Homologous_superfamily IPR023214 HAD superfamily
Homologous_superfamily IPR036412 HAD-like superfamily
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Domain Details Per Protein
Protein Length DDHD domain HAD-like superfamily HAD superfamily LNS2/PITP
UniProtKB:Q9I9N8
InterPro
942
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 21
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA plrdgb-201 (1)
Ensembl
Ensembl 824 nt
ZFIN BLAST
mRNA plrdgb-202 (1)
Ensembl
Ensembl 3,322 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-214B15ZFIN Curated Data
Contained inFosmidCH1073-281G2ZFIN Curated Data
Contained inFosmidCH1073-443K13ZFIN Curated Data
EncodesESTeu294Thisse et al., 2005
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_131575 (1)3325 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CU694954 (2)84423 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:Q9I9N8 (1)942 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
No data available
Citations
TSV
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