PUBLICATION
TCMacro: A Simple and Robust ImageJ-Based Method for Automated Measurement of Tail Coiling Activity in Zebrafish
- Authors
- Kurnia, K.A., Santoso, F., Sampurna, B.P., Audira, G., Huang, J.C., Chen, K.H., Hsiao, C.D.
- ID
- ZDB-PUB-210828-10
- Date
- 2021
- Source
- Biomolecules 11(8): (Journal)
- Registered Authors
- Hsiao, Chung-Der
- Keywords
- ImageJ, ROI, chorion, embryo, tail coiling, zebrafish
- MeSH Terms
-
- Aminobenzoates/pharmacology
- Animals
- Benchmarking
- Caffeine/pharmacology*
- Diagnostic Imaging/methods*
- Dose-Response Relationship, Drug
- Embryo, Nonmammalian
- High-Throughput Screening Assays
- Image Processing, Computer-Assisted/statistics & numerical data
- Movement/drug effects
- Movement/physiology
- Psychotropic Drugs/pharmacology*
- Software*
- Tail/drug effects*
- Tail/physiology
- Zebrafish
- PubMed
- 34439799 Full text @ Biomolecules
Citation
Kurnia, K.A., Santoso, F., Sampurna, B.P., Audira, G., Huang, J.C., Chen, K.H., Hsiao, C.D. (2021) TCMacro: A Simple and Robust ImageJ-Based Method for Automated Measurement of Tail Coiling Activity in Zebrafish. Biomolecules. 11(8):.
Abstract
Tail coiling is a reflection response in fish embryos that can be used as a model for neurotoxic analysis. The previous method to analyze fish tail coiling is largely based on third-party software. In this study, we aim to develop a simple and cost-effective method called TCMacro by using ImageJ macro to reduce the operational complexity. The basic principle of the current method is based on the dynamic change of pixel intensity in the region of interest (ROI). When the fish tail is moving, the average intensity is increasing. In time when the fish freeze, the peak of mean intensity is maintaining at a relatively low level. By using the optimized macro settings and excel VBA scripts, all the tail coiling measurement processes can be archived with few operation steps with high precision. Three major endpoints of tail coiling counts, tail coiling duration and tail coiling intervals can be obtained in batch. To validate this established method, we tested the potential neurotoxic activity of Tricaine (methanesulfonate, MS-222) and psychoactive compound of caffeine. Zebrafish embryos after Tricaine exposure displayed significantly less tail coiling activity in a dose-dependent manner, and were comparable to manual counting through the Wilcoxon test and Pearson correlation double validation. Zebrafish embryos after caffeine exposure displayed significantly high tail coiling activity. In conclusion, the TCMacro method presented in this study provides a simple and robust method that is able to measure the relative tail coiling activities in zebrafish embryos in a high-throughput manner.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping