PUBLICATION
Identification and characterization of human FHDC1, mouse Fhdc1 and zebrafish fhdc1 genes in silico
- Authors
- Katoh, M., and Katoh, M.
- ID
- ZDB-PUB-040514-3
- Date
- 2004
- Source
- International journal of molecular medicine 13(6): 929-934 (Journal)
- Registered Authors
- Katoh, Masaru
- Keywords
- none
- MeSH Terms
-
- Amino Acid Sequence
- Animals
- Base Sequence
- Chromosome Mapping
- Computational Biology
- Cytoskeletal Proteins
- DNA, Complementary/genetics
- Expressed Sequence Tags*
- Humans
- Mice
- Molecular Sequence Data
- Protein Isoforms/genetics
- Proteins/genetics*
- Sequence Alignment
- Zebrafish
- PubMed
- 15138637 Full text @ Int. J. Mol. Med.
Citation
Katoh, M., and Katoh, M. (2004) Identification and characterization of human FHDC1, mouse Fhdc1 and zebrafish fhdc1 genes in silico. International journal of molecular medicine. 13(6):929-934.
Abstract
Formin homology proteins, implicated in organogenesis and carcinogenesis, are actin regulators with scaffold function. FMNL1, FMNL2, FMNL3, DIAPH1, DIAPH2, DIAPH3, DAAM1 and DAAM2 are FDD-type Formin homology proteins, while FHOD1, FHOD3, GRID2IP, Fmn1 and Fmn2 are non-FDD-type Formin homology proteins. Here, we identified human FHDC1 gene and vertebrate FHDC1 orthologs by using bioinformatics. The complete coding sequence of human FHDC1 cDNA was determined by assembling 3'-recombinated FLJ35083 chimeric cDNA and 5'-truncated KIAA1727 (AB051514.1) partial cDNA. The complete coding sequence of mouse Fhdc1 cDNA was determined by assembling 3'-truncated CD555494 EST and 5'-truncated 6330505N24 (AK031946.1) partial cDNA. The complete coding sequence of zebrafish fhdc1 cDNA was determined by assembling fhdc1 exons within zebrafish genome clone DKEY-4A14 (BX571710.4). FHDC1 gene was located at human chromosome 4q31.3, and Fhdc1 gene at mouse chromosome 3F1. Human FHDC1 (1143 aa) showed 73.3% total amino-acid identity with mouse Fhdc1 (1148 aa), and 43.4% total amino-acid identity with zebrafish Fhdc1 (1165 aa). FDCH1-FDCH5 domains were identified as novel conserved regions among vertebrate FHDC1 orthologs. Human FHDC1, mouse Fhdc1, and zebrafish Fhdc1 were non-FDD-type Formin homology proteins with FH1 and FH2 domains in the N-terminal part as well as with FDCH1, FDCH2, FDCH3, FDCH4, and FDCH5 domains in the C-terminal part. This is the first report on the identification and characterization of the human FHDC1, mouse Fhdc1 and zebrafish fhdc1 genes.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping