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Research
General Information
ZIRC
ZFIN ID: ZDB-PERS-970109-6
Burgess, Shawn
Email: burgess@nhgri.nih.gov
URL: https://www.genome.gov/10000502/burgess--group/
Affiliation: Burgess Lab
and also: Burgess & Lin Lab
Address: National Human Genome Research Center National Institutes of Health Building 50, Room 5537 50 South Drive Bethesda, MD 20892-8004 USA
Country: United States
Phone: (301) 594-8224
Fax: (301) 496-0474
Orcid ID: 0000-0003-1147-0596


BIOGRAPHY AND RESEARCH INTERESTS
Wesleyan University (B.A.)
Johns Hopkins Medical School (Ph.D.)
Massachusetts Institute of Technology (postdoc)


PUBLICATIONS
Acevedo-Canabal, A., Colón-Cruz, L., Rodriguez-Morales, R., Varshney, G.K., Burgess, S., González-Sepúlveda, L., Yudowski, G., Behra, M. (2019) Altered Swimming Behaviors in Zebrafish Larvae Lacking Cannabinoid Receptor 2. Cannabis and cannabinoid research. 4:88-101
Pei, W., Burgess, S.M. (2019) Microinjection in Zebrafish for Genome Editing and Functional Studies. Methods in molecular biology (Clifton, N.J.). 1874:459-474
Rissone, A., Burgess, S.M. (2018) Rare Genetic Blood Disease Modeling in Zebrafish. Frontiers in genetics. 9:348
Unal Eroglu, A., Mulligan, T.S., Zhang, L., White, D.T., Sengupta, S., Nie, C., Lu, N.Y., Qian, J., Xu, L., Pei, W., Burgess, S.M., Saxena, M.T., Mumm, J.S. (2018) Multiplexed CRISPR/Cas9 Targeting of Genes Implicated in Retinal Regeneration and Degeneration. Frontiers in cell and developmental biology. 6:88
Tseng, W.C., Loeb, H.E., Pei, W., Tsai-Morris, C.H., Xu, L., Cluzeau, C.V., Wassif, C.A., Feldman, B., Burgess, S.M., Pavan, W.J., Porter, F.D. (2018) Modeling Niemann-Pick disease type C1 in zebrafish: a robust platform for in vivo screening of candidate therapeutic compounds.. Disease models & mechanisms. 11(9)
Pei, W., Xu, L., Huang, S.C., Pettie, K., Idol, J., Rissone, A., Jimenez, E., Sinclair, J.W., Slevin, C., Varshney, G.K., Jones, M., Carrington, B., Bishop, K., Huang, H., Sood, R., Lin, S., Burgess, S.M. (2018) Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues. NPJ Regenerative medicine. 3:11
Giannelou, A., Wang, H., Zhou, Q., Park, Y.H., Abu-Asab, M.S., Ylaya, K., Stone, D.L., Sediva, A., Sleiman, R., Sramkova, L., Bhatla, D., Serti, E., Tsai, W.L., Yang, D., Bishop, K., Carrington, B., Pei, W., Deuitch, N., Brooks, S., Edwan, J.H., Joshi, S., Prader, S., Kaiser, D., Owen, W.C., Sonbul, A.A., Zhang, Y., Niemela, J.E., Burgess, S.M., Boehm, M., Rehermann, B., Chae, J., Quezado, M.M., Ombrello, A.K., Buckley, R.H., Grom, A.A., Remmers, E.F., Pachlopnik, J.M., Su, H.C., Gutierrez-Cruz, G., Hewitt, S.M., Sood, R., Risma, K., Calvo, K.R., Rosenzweig, S.D., Gadina, M., Hafner, M., Sun, H.W., Kastner, D.L., Aksentijevich, I. (2018) Aberrant tRNA processing causes an autoinflammatory syndrome responsive to TNF inhibitors. Annals of the rheumatic diseases. 77(4):612-619
Crawford, N.G., Kelly, D.E., Hansen, M.E.B., Beltrame, M.H., Fan, S., Bowman, S.L., Jewett, E., Ranciaro, A., Thompson, S., Lo, Y., Pfeifer, S.P., Jensen, J.D., Campbell, M.C., Beggs, W., Hormozdiari, F., Mpoloka, S.W., Mokone, G.G., Nyambo, T., Wolde Meskel, D., Belay, G., Haut, J., Rothschild, H., Zon, L., Zhou, Y., Kovacs, M.A., Xu, M., Zhang, T., Bishop, K., Sinclair, J., Rivas, C., Elliot, E., Choi, J., Li, S.A., Hicks, B., Burgess, S., Abnet, C., Watkins-Chow, D.E., Oceana, E., Song, Y.S., Eskin, E., Brown, K.M., Marks, M.S., Loftus, S.K., Pavan, W.J., Yeager, M., Chanock, S., Tishkoff, S. (2017) Loci associated with skin pigmentation identified in African populations. Science (New York, N.Y.). 358(6365)
Li, H., Pei, W., Vergarajauregui, S., Zerfas, P.M., Raben, N., Burgess, S.M., Puertollano, R. (2017) Novel Degenerative and Developmental Defects in a Zebrafish Model of Mucolipidosis Type IV. Human molecular genetics. 26(14):2701-2718
Varshney, G.K., Carrington, B., Pei, W., Bishop, K., Chen, Z., Fan, C., Xu, L., Jones, M., LaFave, M.C., Ledin, J., Sood, R., Burgess, S.M. (2016) A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish. Nature Protocols. 11:2357-2375
Pei, W., Huang, S.C., Xu, L., Pettie, K., Ceci, M.L., Sánchez, M., Allende, M.L., Burgess, S.M. (2016) Loss of Mgat5a-mediated N-glycosylation stimulates regeneration in zebrafish.. Cell regeneration (London, England). 5:3
Pei, W., Xu, L., Varshney, G.K., Carrington, B., Bishop, K., Jones, M., Huang, S.C., Idol, J., Pretorius, P.R., Beirl, A., Schimmenti, L.A., Kindt, K.S., Sood, R., Burgess, S.M. (2016) Additive reductions in zebrafish PRPS1 activity result in a spectrum of deficiencies modeling several human PRPS1-associated diseases. Scientific Reports. 6:29946
Vrljicak, P., Tao, S., Varshney, G.K., Quach, H.N., Joshi, A., LaFave, M.C., Burgess, S.M., Sampath, K. (2016) Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility. G3 (Bethesda). 6(4):805-17
Varshney, G.K., Zhang, S., Pei, W., Adomako-Ankomah, A., Fohtung, J., Schaffer, K., Carrington, B., Maskeri, A., Slevin, C., Wolfsberg, T., Ledin, J., Sood, R., Burgess, S.M. (2016) CRISPRz: a database of zebrafish validated sgRNAs. Nucleic acids research. 44(D1):D822-6
Planchart, A., Mattingly, C.J., Allen, D., Ceger, P., Casey, W., Hinton, D., Kanungo, J., Kullman, S.W., Tal, T., Bondesson, M., Burgess, S.M., Sullivan, C., Kim, C., Behl, M., Padilla, S., Reif, D.M., Tanguay, R.L., Hamm, J. (2016) Advancing toxicology research using in vivo high throughput toxicology with small fish models. Altex. 33(4):435-452
Carrington, B., Varshney, G.K., Burgess, S.M., Sood, R. (2015) CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic acids research. 43(22):e157
Varshney, G.K., Zhang, S., Burgess, S.M., ZFIN Staff (2015) Automated Data Load From CRISPRz. ZFIN Direct Data Submission.
Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.M., Higashijima, S., Burgess, H.A. (2015) A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in neural circuits. 9:78
Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.H., Higashijima, S., and Burgess, H.A. (2015) Enhancer Trap Transgenics. ZFIN Direct Data Submission.
Seiler, C., Gebhart, N., Zhang, Y., Shinton, S.A., Li, Y.S., Ross, N.L., Liu, X., Li, Q., Bilbee, A.N., Varshney, G.K., LaFave, M.C., Burgess, S.M., Balciuniene, J., Balciunas, D., Hardy, R.R., Kappes, D.J., Wiest, D.L., Rhodes, J. (2015) Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. PLoS One. 10:e0131908
Varshney, G.K., Pei, W., LaFave, M.C., Idol, J., Xu, L., Gallardo, V., Carrington, B., Bishop, K., Jones, M., Li, M., Harper, U., Huang, S.C., Prakash, A., Chen, W., Sood, R., Ledin, J., Burgess, S.M. (2015) High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome research. 25(7):1030-42
Gallardo, V.E., Varshney, G.K., Lee, M., Bupp, S., Xu, L., Shinn, P., Crawford, N.P., Inglese, J., Burgess, S.M. (2015) Phenotype-driven chemical screening in zebrafish for collective cell migration inhibitors identifies multiple potential pathways for targeting metastasis. Disease models & mechanisms. 8(6):565-76
Yin, L., Maddison, L.A., Li, M., Kara, N., LaFave, M.C., Varshney, G.K., Burgess, S.M., Patton, J.G., Chen, W. (2015) Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs. Genetics. 200(2):431-41
Quach, H.N., Tao, S., Vrljicak, P., Joshi, A., Ruan, H., Sukumaran, R., Varshney, G.K., LaFave, M.C., Screen Team, T.D., Burgess, S.M., Winkler, C., Emelyanov, A., Parinov, S., Sampath, K. (2015) A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. G3 (Bethesda). 5(6):1283-99
Varshney, G.K., Sood, R., Burgess, S.M. (2015) Understanding and Editing the Zebrafish Genome. Advances in genetics. 92:1-52
LaFave, M.C., Varshney, G.K., Vemulapalli, M., Mullikin, J.C., Burgess, S.M. (2014) A Defined Zebrafish Line for High-Throughput Genetics and Genomics: NHGRI-1. Genetics. 198(1):167-70
Zhou, Q., Yang, D., Ombrello, A.K., Zavialov, A.V., Toro, C., Zavialov, A.V., Stone, D.L., Chae, J.J., Rosenzweig, S.D., Bishop, K., Barron, K.S., Kuehn, H.S., Hoffmann, P., Negro, A., Tsai, W.L., Cowen, E.W., Pei, W., Milner, J.D., Silvin, C., Heller, T., Chin, D.T., Patronas, N.J., Barber, J.S., Lee, C.C., Wood, G.M., Ling, A., Kelly, S.J., Kleiner, D.E., Mullikin, J.C., Ganson, N.J., Kong, H.H., Hambleton, S., Candotti, F., Quezado, M.M., Calvo, K.R., Alao, H., Barham, B.K., Jones, A., Meschia, J.F., Worrall, B.B., Kasner, S.E., Rich, S.S., Goldbach-Mansky, R., Abinun, M., Chalom, E., Gotte, A.C., Punaro, M., Pascual, V., Verbsky, J.W., Torgerson, T.R., Singer, N.G., Gershon, T.R., Ozen, S., Karadag, O., Fleisher, T.A., Remmers, E.F., Burgess, S.M., Moir, S.L., Gadina, M., Sood, R., Hershfield, M.S., Boehm, M., Kastner, D.L., Aksentijevich, I. (2014) Early-onset stroke and vasculopathy associated with mutations in ADA2. The New England Journal of Medicine. 370(10):911-920
Varshney, G.K., and Burgess, S.M. (2014) Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. Briefings in Functional Genomics. 13(2):82-94
Xu, H., Ye, D., Behra, M., Burgess, S., Chen, S., and Lin, F. (2014) Gbeta1 controls collective cell migration by regulating the protrusive activity of leader cells in the posterior lateral line primordium. Developmental Biology. 385(2):316-27
Rothschild, S.C., Lahvic, J., Francescatto, L., McLeod, J.J., Burgess, S.M., and Tombes, R.M. (2013) CaMK-II activation is essential for zebrafish inner ear development and acts through Delta-Notch signaling. Developmental Biology. 381(1):179-88
Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
Varshney, G.K., Zhang, S., Gildea, D.E., Wolfsberg, T.G., and Burgess, S.M. (2013) The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion. Nucleic acids research. 41(D1):D861-864
Burgess, S., and Lin, S. (2012) Viral Insertion Mutants Overwrite Data. ZFIN Direct Data Submission.
Burgess, S.M. (2012) The changing conditions of zebrafish mutants. Proceedings of the National Academy of Sciences of the United States of America. 109(38):15082-15083
Liang, J., Wang, D., Renaud, G., Wolfsberg, T.G., Wilson, A.F., and Burgess, S.M. (2012) The stat3/socs3a Pathway Is a Key Regulator of Hair Cell Regeneration in Zebrafish stat3/socs3a Pathway: Regulator of Hair Cell Regeneration. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(31):10662-10673
Lee, M.S., Bonner, J.R., Bernard, D.J., Sanchez, E.L., Sause, E.T., Prentice, R.R., Burgess, S.M., and Brody, L.C. (2012) Disruption of the folate pathway in zebrafish causes developmental defects. BMC Developmental Biology. 12(1):12
Behra, M., Gallardo, V.E., Bradsher, J., Torrado, A., Elkahloun, A., Idol, J., Sheehy, J., Zonies, S., Xu, L., Shaw, K.M., Satou, C., Higashijima, S.I., Weinstein, B.M., and Burgess, S.M. (2012) Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. BMC Developmental Biology. 12(1):6
Milla, L.A., Cortes, C.R., Hodar, C.Q., Onate, M.G., Cambiazo, V., Burgess, S.M., and Palma, V. (2012) Yeast-based assay identifies novel Shh/Gli target genes in vertebrate development. BMC Genomics. 13(1):2
Yan, J., and Burgess, S.M. (2012) Using a yeast inverse one-hybrid system to identify functional binding sites of transcription factors. Methods in molecular biology (Clifton, N.J.). 786:275-290
Burgess, S., and Lin, S. (2011) Viral Insertion Mutants. ZFIN Direct Data Submission.
Amsterdam, A., Varshney, G.K., and Burgess, S.M. (2011) Retroviral-mediated Insertional Mutagenesis in Zebrafish. Methods in cell biology. 104:59-82
Liang, J., Renaud, G., and Burgess, S.M. (2011) Sequencing-based Expression Profiling in Zebrafish. Methods in cell biology. 104:379-399
Gallardo, V.E., Liang, J., Behra, M., Elkahloun, A., Villablanca, E.J., Russo, V., Allende, M.L., and Burgess, S.M. (2010) Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish. BMC Developmental Biology. 10:120
Liang, J., and Burgess, S.M. (2009) Gross and fine dissection of inner ear sensory epithelia in adult zebrafish (Danio rerio). Journal of visualized experiments : JoVE. (27)
Behra, M., Bradsher, J., Sougrat, R., Gallardo, V., Allende, M.L., and Burgess, S.M. (2009) Phoenix is required for mechanosensory hair cell regeneration in the zebrafish lateral line. PLoS Genetics. 5(4):e1000455
Jao, L.E., and Burgess, S.M. (2009) Production of pseudotyped retrovirus and the generation of proviral transgenic zebrafish. Methods in molecular biology (Clifton, N.J.). 546:13-30
Gomez, G.A., Veldman, M.B., Zhao, Y., Burgess, S., and Lin, S. (2009) Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. PLoS One. 4(3):e4994
Jao, L.E., Maddison, L., Chen, W., and Burgess, S.M. (2008) Using retroviruses as a mutagenesis tool to explore the zebrafish genome. Briefings in functional genomics & proteomics. 7(6):427-443
Bergeron, S.A., Milla, L.A., Villegas, R., Shen, M.C., Burgess, S.M., Allende, M.L., Karlstrom, R.O., and Palma, V. (2008) Expression profiling identifies novel Hh/Gli-regulated genes in developing zebrafish embryos. Genomics. 91(2):165-177
Zeng, J., Yan, J., Wang, T., Mosbrook-Davis, D., Dolan, K.T., Christensen, R., Stormo, G.D., Haussler, D., Lathrop, R.H., Brachmann, R.K., and Burgess, S.M. (2008) Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic acids research. 36(1):e8
Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
Burgess, S. (2006) New techniques for using zebrafish as a model for development. Methods (San Diego, Calif.). 39(3):181-182
Hardison, A.L., Lichten, L., Banerjee-Basu, S., Becker, T.S., and Burgess, S.M. (2005) The zebrafish gene claudinj is essential for normal ear function and important for the formation of the otoliths. Mechanisms of Development. 122(7-8):949-958
Ng, D., Thakker, N., Corcoran, C.M., Donnai, D., Perveen, R., Schneider, A., Hadley, D.W., Tifft, C., Zhang, L., Wilkie, A.O., Van Der Smagt, J.J,, Gorlin.,R.J., Burgess, S.M., Bardwell, V.J., Black, G.C., and Biesecker, L.G. (2004) Oculofaciocardiodental and Lenz microphthalmia syndromes result from distinct classes of mutations in BCOR. Nature Genetics. 36(4):411-416
Kurita, K., Burgess, S.M., and Sakai, N. (2004) Transgenic zebrafish produced by retroviral infection of in vitro-cultured sperm. Proceedings of the National Academy of Sciences of the United States of America. 101(5):1263-1267
Nissen, R.M., Yan, J., Amsterdam, A., Hopkins, N., and Burgess, S.M. (2003) Zebrafish foxi one modulates cellular responses to Fgf signaling required for the integrity of ear and jaw patterning. Development (Cambridge, England). 130(11):2543-2554
Golling, G., Amsterdam, A., Sun, Z., Antonelli, M., Maldonado, E., Chen, W., Burgess, S., Haldi, M., Artzt, K., Farrington, S., Lin, S.Y., Nissen, R.M., and Hopkins, N. (2002) Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Nature Genetics. 31(2):135-140
Chen, W.B., Burgess, S., Golling, G., Amsterdam, A., and Hopkins, N. (2002) High-throughput selection of retrovirus producer cell lines leads to markedly improved efficiency of germ line-transmissible insertions in zebra fish. Journal of virology. 76(5):2192-2198
Burgess, S., Reim, G., Chen, W., Hopkins, N., and Brand, M. (2002) The zebrafish spiel-ohne-grenzen (spg) gene encodes the POU domain protein Pou2 related to mammalian Oct4 and is essential for formation of the midbrain and hindbrain, and for pre-gastrula morphogenesis. Development (Cambridge, England). 129(4):905-916
Chen, W., Burgess, S., and Hopkins, N. (2001) Analysis of the zebrafish smoothened mutant reveals conserved and divergent functions of hedgehog activity. Development (Cambridge, England). 128(12):2385-2396
Burgess, S. and Hopkins, N. (2000) Use of pseudotyped retroviruses in zebrafish as genetic tags. Methods in enzymology. 327:145-161
Amsterdam, A., Burgess, S., Golling, G., Chen, W., Sun, Z., Townsend, K., Farrington, S., Haldi, M., and Hopkins, N. (1999) A large-scale insertional mutagenesis screen in zebrafish. Genes & Development. 13(20):2713-2724
Becker, T.S., Burgess, S.M., Amsterdam, A.H., Allende, M.L., and Hopkins, N. (1998) not really finished is crucial for development of the zebrafish outer retina and encodes a transcription factor highly homologous to human Nuclear Respiratory Factor-1 and avian Initiation Binding Repressor. Development (Cambridge, England). 125:4369-4378
Sakai, N., Burgess, S., and Hopkins, N. (1997) Delayed in vitro fertilization of zebrafish eggs in Hank's saline containing bovine serum albumin. Molecular marine biology and biotechnology. 6(2):84-87
Amsterdam, A., Yoon, C., Allende, M., Becker, T., Kawakami, K., Burgess, S., Gaiano, N., and Hopkins, N. (1997) Retrovirus-mediated insertional mutagenesis in zebrafish and identification of a molecular marker for embryonic germ cells. Cold Spring Harbor symposia on quantitative biology. 62:437-450

NON-ZEBRAFISH PUBLICATIONS
Wu X, Li Y, Crise B, Burgess SM. Transcription start regions in the human genome are favored targets for MLV integration Science. 2003 Jun 13;300(5626):1749-51

LaFave MC, Varshney GK, and Burgess SM (2015). GeIST: a pipeline for mapping integrated DNA elements. Bioinformatics pii: btv350. [Epub ahead of print] doi: 10.1093/bioinformatics/btv350

Chandler RJ, LaFave MC, Varshney GK, Trivedi NS, Carrillo-Carrasco N, Senac JS, Wu W, Hoffmann V, Elkahloun AG, Burgess SM, Venditti CP (2015). Vector design influences hepatic genotoxicity after adeno-associated virus gene therapy. J Clin Invest 125:870-80

Walia JS, Altaleb N, Bello A, Kruck C, LaFave MC, Varshney GK, Burgess SM, Chowdhury B, Hurlbut D, Hemming R, Kobinger GP, Triggs-Raine B (2015). Long-term correction of sandhoff disease following intravenous delivery of rAAV9 to mouse neonates. Mol Ther 23:414-22

Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM (2014). trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags. BMC Bioinformatics 15:329

LaFave MC, Varshney GK, Gildea DE, Wolfsberg TG, Baxevanis AD, Burgess SM (2014). MLV integration site selection is driven by strong enhancers and active promoters. Nucleic Acids Res 42:4257-69 PMC3985626

Chen L, Stuart L, Ohsumi TK, Burgess S, Varshney GK, Dastur A, Borowsky M, Benes C, Lacy-Hulbert A, Schmidt EV (2013). Transposon activation mutagenesis as a screening tool for identifying resistance to cancer therapeutics. BMC Cancer 13:93 PMC3598783

Milla LA, Cortes CR, Hodar C, Onate MG, Cambiazo V, Burgess SM, Palma V (2012). Yeast-based assay identifies novel Shh/Gli target genes in vertebrate development. BMC Dev Biol 12:16 PMC3285088

Zeng J, Yan J, Wang T, Mosbrook-Davis D, Dolan KT, Christensen R, Stormo GD, Haussler D, Lathrop RH, Brachmann RK, Burgess SM (2008). Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Res 36: e8. PMC2248728

Wang T, Zeng J, Lowe CB, Yang M, Burgess SM, Brachmann RK, Haussler D (2007). Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proc Natl Acad Sci USA 104: 18613-8. PMC2141825

Wu X, Luke BT, and Burgess SM (2006). Redefining the common insertion site. Virology 344: 292-5.

18. Yant SR, Wu X, Huang Y, Garrison B, Burgess SM, and Kay MA (2005). High-resolution genome-wide mapping of transposons integration in mammals. Mol Cell Biol 25: 2085-94

Wu X, Li Y, Crise B, Burgess SM, and Munroe D (2005). Weak palindromic consensus sequence is a common feature found at integration target sites of many retroviruses. J Virol 79: 5211-4

Nakai H, Wu X, Fuess S, Storm T, Munroe D, Montini E, Burgess SM, Grompe M, and Kay MA (2005). A large-scale molecular characterization of adeno-associated virus vector integration in mouse liver. J Virol 79: 1749-51

Youngman MJ, Hobbs AE, Burgess SM, Srinivasan M, and Jensen RE (2004). Mmm2p, a mitochondrial outer membrane protein required for yeast mitochondrial shape and maintenance of mtDNA nucleoids. J Cell Biol 164: 677-88