ZFIN ID: ZDB-PERS-020725-3
Yaksi, Emre
Email: emreyaksi.nerf@gmail.com
URL: http://yaksilab.com/
Affiliation: Yaksi Lab
Address: NERF Founded by IMEC, K.U.Leuven and VIB Kapeldreef 75 B-3001 Leuven Belgium
Country: Germany
Phone: +32 ( 0 )16 28 87 39
Fax: +32 16 28 16 70


Bartoszek, E.M., Ostenrath, A.M., Jetti, S.K., Serneels, B., Mutlu, A.K., Chau, K.T.P., Yaksi, E. (2021) Ongoing habenular activity is driven by forebrain networks and modulated by olfactory stimuli. Current biology : CB. 31(17):3861-3874.e3
Palumbo, F., Serneels, B., Pelgrims, R., Yaksi, E. (2020) The Zebrafish Dorsolateral Habenula Is Required for Updating Learned Behaviors. Cell Reports. 32:108054
Kermen, F., Darnet, L., Wiest, C., Palumbo, F., Bechert, J., Uslu, O., Yaksi, E. (2020) Stimulus-specific behavioral responses of zebrafish to a large range of odors exhibit individual variability. BMC Biology. 18:66
Jurisch-Yaksi, N., Yaksi, E., Kizil, C. (2020) Radial glia in the zebrafish brain: Functional, structural, and physiological comparison with the mammalian glia. Glia. 68(12):2451-2470
Kermen, F., Lal, P., Faturos, N.G., Yaksi, E. (2020) Interhemispheric connections between olfactory bulbs improve odor detection. PLoS Biology. 18:e3000701
Diaz Verdugo, C., Myren-Svelstad, S., Aydin, E., Van Hoeymissen, E., Deneubourg, C., Vanderhaeghe, S., Vancraeynest, J., Pelgrims, R., Cosacak, M.I., Muto, A., Kizil, C., Kawakami, K., Jurisch-Yaksi, N., Yaksi, E. (2019) Glia-neuron interactions underlie state transitions to generalized seizures. Nature communications. 10:3830
Fore, S., Yaksi, E. (2019) Habenula: A Role in Brain State Transitions during Coping Behavior. Current biology : CB. 29:R692-R694
Olstad, E.W., Ringers, C., Hansen, J.N., Wens, A., Brandt, C., Wachten, D., Yaksi, E., Jurisch-Yaksi, N. (2018) Ciliary Beating Compartmentalizes Cerebrospinal Fluid Flow in the Brain and Regulates Ventricular Development. Current biology : CB. 29(2):229-241.e6
Fore, S., Palumbo, F., Pelgrims, R., Yaksi, E. (2018) Information processing in the vertebrate habenula. Seminars in cell & developmental biology. 78:130-139
Lal, P., Tanabe, H., Suster, M.L., Ailani, D., Kotani, Y., Muto, A., Itoh, M., Iwasaki, M., Wada, H., Yaksi, E., Kawakami, K. (2018) Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish. BMC Biology. 16:45
Bergboer, J.G.M., Wyatt, C., Austin-Tse, C., Yaksi, E., Drummond, I.A. (2018) Assaying sensory ciliopathies using calcium biosensor expression in zebrafish ciliated olfactory neurons. Cilia. 7:2
Reiten, I., Uslu, F.E., Fore, S., Pelgrims, R., Ringers, C., Diaz Verdugo, C., Hoffman, M., Lal, P., Kawakami, K., Pekkan, K., Yaksi, E., Jurisch-Yaksi, N. (2017) Motile-Cilia-Mediated Flow Improves Sensitivity and Temporal Resolution of Olfactory Computations. Current biology : CB. 27(2):166-174
Vendrell-Llopis, N., Yaksi, E. (2015) Evolutionary conserved brainstem circuits encode category, concentration and mixtures of taste. Scientific Reports. 5:17825
Wyatt, C., Bartoszek, E.M., Yaksi, E. (2015) Methods for studying the zebrafish brain: past, present and future. The European journal of neuroscience. 42(2):1746-63
Hüsken, U., Stickney, H.L., Gestri, G., Bianco, I.H., Faro, A., Young, R.M., Roussigne, M., Hawkins, T.A., Beretta, C.A., Brinkmann, I., Paolini, A., Jacinto, R., Albadri, S., Dreosti, E., Tsalavouta, M., Schwarz, Q., Cavodeassi, F., Barth, A.K., Wen, L., Zhang, B., Blader, P., Yaksi, E., Poggi, L., Zigman, M., Lin, S., Wilson, S.W., Carl, M. (2014) Tcf7l2 Is Required for Left-Right Asymmetric Differentiation of Habenular Neurons. Current biology : CB. 24(19):2217-27
Jetti, S.K., Vendrell-Llopis, N., and Yaksi, E. (2014) Spontaneous activity governs olfactory representations in spatially organized habenular microcircuits. Current biology : CB. 24(4):434-439
Dreosti, E., Vendrell Llopis, N., Carl, M., Yaksi, E., and Wilson, S.W. (2014) Left-right asymmetry is required for the habenulae to respond to both visual and olfactory stimuli. Current biology : CB. 24(4):440-445
Kermen, F., Franco, L.M., Wyatt, C., and Yaksi, E. (2013) Neural circuits mediating olfactory-driven behavior in fish. Frontiers in neural circuits. 7:62
Jurisch-Yaksi, N., Rose, A.J., Lu, H., Raemaekers, T., Munck, S., Baatsen, P., Baert, V., Vermeire, W., Scales, S.J., Verleyen, D., Vandepoel, R., Tylzanowski, P., Yaksi, E., de Ravel, T., Yost, H.J., Froyen, G., Arrington, C.B., and Annaert, W. (2013) Rer1p maintains ciliary length and signaling by regulating γ-secretase activity and Foxj1a levels. The Journal of cell biology. 200(6):709-720
Blumhagen, F., Zhu, P., Shum, J., Schärer, Y.P., Yaksi, E., Deisseroth, K., and Friedrich, R.W. (2011) Neuronal filtering of multiplexed odour representations. Nature. 479(7374):493-8
Friedrich, R.W., Yaksi, E., Judkewitz, B., and Wiechert, M.T. (2009) Processing of odor representations by neuronal circuits in the olfactory bulb. Annals of the New York Academy of Sciences. 1170:293-297
Yaksi, E., von Saint Paul, F., Niessing, J., Bundschuh, S.T., and Friedrich, R.W. (2009) Transformation of odor representations in target areas of the olfactory bulb. Nature Neuroscience. 12(4):474-482
Tabor, R., Yaksi, E., and Friedrich, R.W. (2008) Multiple functions of GABA(A) and GABA(A) receptors during pattern processing in the zebrafish olfactory bulb. The European journal of neuroscience. 28(1):117-127
Yaksi, E., Judkewitz, B., and Friedrich, R.W. (2007) Topological Reorganization of Odor Representations in the Olfactory Bulb. PLoS Biology. 5(7):e178
Yaksi, E. (2007) Analysis of odor evoked activity patterns in zebrafish olfactory system by calcium imaging. Ph.D. Thesis. :22p
Yaksi, E., and Friedrich, R.W. (2006) Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging. Nature Methods. 3(5):377-383
Feng, B., Bulchand, S., Yaksi, E., Friedrich, R.W., and Jesuthasan, S.J. (2005) The recombination activation gene 1 (Rag1) is expressed in a subset of zebrafish olfactory neurons but is not essential for axon targeting or amino acid detection. BMC Neuroscience. 6:46
Li, J., Mack, J.A., Souren, M., Yaksi, E., Higashijima, S., Mione, M., Fetcho, J.R., and Friedrich, R.W. (2005) Early development of functional spatial maps in the zebrafish olfactory bulb. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25(24):5784-95
Tabor, R., Yaksi, E., Weislogel, J.M., and Friedrich, R.W. (2004) Processing of odor mixtures in the zebrafish olfactory bulb. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24(29):6611-6620