ZFIN ID: ZDB-LAB-970416-21
Collodi Lab
PI/Director: Collodi, Paul
Contact Person: Collodi, Paul
Email:
URL:
Address: Department of Animal Sciences Purdue University Smith Hall 901 W. State St. West Lafayette, IN 47907-2054 USA
Country: United States
Phone: (317) 494-9280
Fax: (317) 494-9347
Line Designation: pu


GENOMIC FEATURES ORIGINATING FROM THIS LAB
Show all 8 genomic features


STATEMENT OF RESEARCH INTERESTS


LAB MEMBERS
Crodian, Jennifer Post-Doc Fan, Lianchun Post-Doc Liu, Xiangyu Graduate Student
Moon, Jesung Graduate Student


ZEBRAFISH PUBLICATIONS OF LAB MEMBERS
Moon, J., Amatruda, J.F. (2016) Biochemical Analysis of Tankyrase Activity in Zebrafish In Vitro and In Vivo. Methods in molecular biology (Clifton, N.J.). 1481:95-100
Wong, T.T., and Collodi, P. (2013) Dorsomorphin promotes survival and germline competence of zebrafish spermatogonial stem cells in culture. PLoS One. 8(8):e71332
Wong, T.T., and Collodi, P. (2013) Inducible Sterilization of Zebrafish by Disruption of Primordial Germ Cell Migration. PLoS One. 8(6):e68455
Wong, T.T., Tesfamichael, A., and Collodi, P. (2013) Production of zebrafish offspring from cultured female germline stem cells. PLoS One. 8(5):e62660
Wang, X., Moon, J., Dodge, M.E., Pan, X., Zhang, L., Hanson, J.M., Tuladhar, R., Ma, Z., Shi, H., Williams, N.S., Amatruda, J.F., Carroll, T.J., Lum, L., and Chen, C. (2013) The development of highly potent inhibitors for porcupine. Journal of medicinal chemistry. 56(6):2700-2704
Wong, T.T., and Collodi, P. (2013) Effects of specific and prolonged expression of zebrafish growth factors, Fgf2 and Lif in primordial germ cells in vivo. Biochemical and Biophysical Research Communications. 430(1):347-351
Wong, T.T., Tesfamichael, A., and Collodi, P. (2013) Identification of promoter elements responsible for gonad-specific expression of zebrafish Deadend and its application to ovarian germ cell derivation. The International journal of developmental biology. 57(9-10):767-772
Dodge, M.E., Moon, J., Tuladhar, R., Lu, J., Jacob, L.S., Zhang, L.S., Shi, H., Wang, X., Moro, E., Mongera, A., Argenton, F., Karner, C.M., Carroll, T.J., Chen, C., Amatruda, J.F., and Lum, L. (2012) Diverse Chemical Scaffolds Support Direct Inhibition of the Membrane-bound O-Acyltransferase Porcupine. The Journal of biological chemistry. 287(27):23246-23254
Wong, T.T., Saito, T., Crodian, J., and Collodi, P. (2011) Zebrafish Germline Chimeras Produced by Transplantation of Ovarian Germ Cells into Sterile Host Larvae. Biology of reproduction. 84(6):1190-1197
Liu, W., Guan, Y., and Collodi, P. (2010) A Zebrafish Cell Culture Assay for the Identification of MicroRNA Targets. Zebrafish. 7(4):343-348
Liu, W., and Collodi, P. (2010) Zebrafish dead end possesses ATPase activity that is required for primordial germ cell development. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 24(8):2641-2650
Fan, L., Moon, J., Wong, T.T., Crodian, J., and Collodi, P. (2008) Zebrafish Primordial Germ Cell Cultures Derived from vasa::RFP Transgenic Embryos. Stem cells and development. 17(3):585-598
Xing, J.G., Lee, L.E., Fan, L., Collodi, P., Holt, S.E., and Bols, N.C. (2008) Initiation of a zebrafish blastula cell line on rainbow trout stromal cells and subsequent development under feeder-free conditions into a cell line, ZEB2J. Zebrafish. 5(1):49-63
Fan, L., Moon, J., Crodian, J., and Collodi, P. (2006) Homologous Recombination in Zebrafish ES Cells. Transgenic Research. 15(1):21-30
Fan, L., and Collodi, P. (2006) Zebrafish embryonic stem cells. Methods in enzymology. 418(1):64-77
Biga, P.R., Roberts, S.B., Iliev, D.B., McCauley, L.A., Moon, J.S., Collodi, P., and Goetz, F.W. (2005) The isolation, characterization, and expression of a novel GDF11 gene and a second myostatin form in zebrafish, Danio rerio. Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. 141(2):218-230
Sun, L., Zou, Z., Collodi, P., Xu, F., Xu, X., and Zhao, Q. (2005) Identification and characterization of a second fibronectin gene in zebrafish. Matrix biology : journal of the International Society for Matrix Biology. 24(1):69-77
Fan, L., Aleström, A., Aleström, P., and Collodi, P. (2004) Production of zebrafish germline chimeras from cultured cells. Methods in molecular biology (Clifton, N.J.). 254:289-300
Fan, L., Aleström, A., Aleström, P., and Collodi, P. (2004) Development of cell cultures with competency for contributing to the zebrafish germ line. Critical reviews in eukaryotic gene expression. 14(1-2):43-52
Fan, L., Crodian, J., and Collodi, P. (2004) Culture of embryonic stem cell lines from zebrafish. The Zebrafish: Cellular and Developmental Biology,2nd Ed. Methods Cell Biol.. 76:151-160
Fan, L., Crodian, J., and Collodi, P. (2004) Production of zebrafish germline chimeras by using cultured embryonic stem (ES) cells. The Zebrafish: Genetics, Genomics and Informatics, 2nd ed., Methods Cell Biol.. 77:113-119
Fan, L., Crodian, J., Liu, X., Aleström, A., Aleström, P., and Collodi, P. (2004) Zebrafish Embryo Cells Remain Pluripotent and Germ-Line Competent for Multiple Passages in Culture. Zebrafish. 1(1):21-26
Liu, X., Zhao, Q., and Collodi, P. (2003) A truncated form of fibronectin is expressed in fish and mammals. Matrix biology : journal of the International Society for Matrix Biology. 22(5):393-396
Sugahara, T., Liu, C.C., Pai, T.G., Collodi, P., Suiko, M., Sakakibara, Y., Nishiyama, K., and Liu, M.-C. (2003) Sulfation of hydroxychlorobiphenyls. Molecular cloning, expression, and functional characterization of zebrafish SULT1 sulfotransferases.. European journal of biochemistry. 270(11):2404-2411
Fan, L., and Collodi, P. (2002) Progress towards cell-mediated gene transfer in zebrafish. Briefings in functional genomics & proteomics. 1(2):131-138
Liu, X. and Collodi, P. (2002) Novel form of fibronectin from zebrafish mediates infectious hematopoietic necrosis virus infection. Journal of virology. 76(2):492-498
Zhao, Q., Liu, X., and Collodi, P. (2001) Identification and characterization of a novel fibronectin in zebrafish. Experimental cell research. 268(2):211-219
Ma, C.G., Fan, L.C., Ganassin, R., Bols, N., and Collodi, P. (2001) Production of zebrafish germ-line chimeras from embryo cell cultures. Proceedings of the National Academy of Sciences of the United States of America. 98(5):2461-2466
Ghosh, C., Liu, Y., Ma, C.G., and Collodi, P. (1997) Cell cultures derived from early zebrafish embryos differentiate in vitro into neurons and astrocytes. Cytotechnology. 23(1-3):221-230
Sun, L., Bradford, C.S., Ghosh, C., Collodi, P., and Barnes, D.W. (1995) ES-like cell cultures derived from early zebrafish embryos. Molecular marine biology and biotechnology. 4:193-199
Collodi, P., Miranda, C.L., Zhao, X., Buhler, D.R., and Barnes, D.W. (1994) Induction of zebrafish (Brachydanio rerio) P450 in vivo and in cell culture. Xenobiotica; the fate of foreign compounds in biological systems. 24:487-493
Ghosh, C., Zhou, Y.L., and Collodi, P. (1994) Derivation and characterization of a zebrafish liver cell line. Cell biology and toxicology. 10:167-176
Ghosh, C. and Collodi, P. (1994) Culture of cells from zebrafish (Brachydanio rerio) blastula-stage embryos. Cytotechnology. 14:21-26
Miranda, C.L., Collodi, P., Zhao, X., Barnes, D.W., and Buhler, D.R. (1993) Regulation of cytochrome P450 expression in a novel liver cell line from zebrafish (Brachydanio rerio). Archives of biochemistry and biophysics. 305:320-327
Collodi, P., Kamei, Y., Sharps, A., Weber, D., and Barnes, D. (1992) Fish embryo cell cultures for derivation of stem cells and transgenic chimeras. Molecular marine biology and biotechnology. 1:257-265
Collodi, P., Kamei, Y., Ernst, T., Miranda, C., Buhler, D.R., and Barnes, D.W. (1992) Culture of cells from zebrafish (Brachydanio rerio) embryo and adult tissues. Cell biology and toxicology. 8(1):43-61
Sharps, A., Nishiyama, K., Collodi, P., and Barnes, D. (1992) Comparison of activities of mammalian viral promoters directing gene expression in vitro in zebrafish and other fish cell lines. Molecular marine biology and biotechnology. 1:426-431