ZFIN ID: ZDB-LAB-161115-2
Neural Circuits and Development lab
PI/Director: Thirumalai, Vatsala
Contact Person: Thirumalai, Vatsala
Email: vatsala@ncbs.res.in
URL: http://www.ncbs.res.in/vtlab/Neural_Circuits_and_Development_Lab/Welcome.html
Address:
Country:
Phone: +91 80 2366 6514
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Line Designation: ncb


GENOMIC FEATURES ORIGINATING FROM THIS LABNo data available


STATEMENT OF RESEARCH INTERESTS
For most animal species, survival depends critically on the ability to move- be it for feeding, escaping predators or selecting a suitable mate. To generate movement, skeletal muscles need to be contracted in precisely coordinated patterns. Neural circuits control the spatial and temporal pattern of skeletal muscle contractions. Our lab is interested in understanding the hierarchy, mechanisms and development of neural circuits that generate movement.

In vertebrates, the circuits that control movement are found in the spinal cord and in the brain. The spinal circuits controlling the generation of locomotion are referred to as ‘central pattern generators’ as the output from these circuits is patterned and rhythmic electrical activity sent to the muscles. These central pattern generators are in turn controlled by sensory drive and by commands from the locomotory centers of the brain. My lab focuses on the development of central pattern generators and the development of descending motor control from the brain. We also seek to understand the mechanisms by which brain locomotor circuits control movement in mature organisms.
We use zebrafish, a small fresh water tropical fish endemic to the Ganges, as our model system. The embryonic and larval stages of these fish are transparent allowing for direct visual observation of developing internal organs including the brain. We employ a suite of techniques to tease out the circuitry responsible for generating swimming in developing and more mature zebrafish. We record electrical activity from individual spinal and brain neurons using extracellular and whole-cell patch clamp techniques. We record activity from populations of neurons simultaneously using calcium imaging. We generate transgenic zebrafish to express proteins of interest in particular neurons. This allows us to selectively ablate and also to electrically activate/inactivate specific populations at will. Using these cutting edge tools and technologies, we hope to throw light on the development of neural circuits and the neural basis of locomotion.


LAB MEMBERS
Kondrychyn, Igor Post-Doc Sengupta, Mohini Post-Doc Yadav, Gnaneshwar Post-Doc
Agarwal, Vandana Graduate Student Jabeen, Shaista Graduate Student Jha, Urvashi Graduate Student
Narayanan, Sriram Graduate Student Robra, Lena Graduate Student Sitaraman, Sahana Graduate Student
Varma, Aalok Graduate Student A, Manjunath Fish Facility Staff


ZEBRAFISH PUBLICATIONS OF LAB MEMBERS x
Shen, H., Bocksteins, E., Kondrychyn, I., Snyders, D., Korzh, V. (2016) Functional antagonism of alpha-subunits of Kv channel in developing brain ventricular system. Development (Cambridge, England). 143(22):4249-4260
Poon, K.L., Liebling, M., Kondrychyn, I., Brand, T., Korzh, V. (2016) Development of the cardiac conduction system in zebrafish. Gene Expression Patterns. 21(2):89-96
Robra, L., Thirumalai, V. (2016) The Intracellular Signaling Molecule Darpp-32 Is a Marker for Principal Neurons in the Cerebellum and Cerebellum-Like Circuits of Zebrafish. Frontiers in Neuroanatomy. 10:81
Venkatesh, B., Lee, A.P., Ravi, V., Maurya, A.K., Lian, M.M., Swann, J.B., Ohta, Y., Flajnik, M.F., Sutoh, Y., Kasahara, M., Hoon, S., Gangu, V., Roy, S.W., Irimia, M., Korzh, V., Kondrychyn, I., Lim, Z.W., Tay, B.H., Tohari, S., Kong, K.W., Ho, S., Lorente-Galdos, B., Quilez, J., Marques-Bonet, T., Raney, B.J., Ingham, P.W., Tay, A., Hillier, L.W., Minx, P., Boehm, T., Wilson, R.K., Brenner, S., and Warren, W.C. (2014) Elephant shark genome provides unique insights into gnathostome evolution. Nature. 505(7482):174-179
Winata, C.L., Kondrychyn, I., Kumar, V., Srinivasan, K.G., Orlov, Y., Ravishankar, A., Prabhakar, S., Stanton, L.W., Korzh, V., and Mathavan, S. (2013) Genome wide analysis reveals zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish. PLoS Genetics. 9(10):e1003852
Kondrychyn, I., Teh, C., Sin, M., and Korzh, V. (2013) Stretching morphogenesis of the roof plate and formation of the central canal. PLoS One. 8(2):e56219
Chu, L.T., Fong, S.H., Kondrychyn, I., Loh, S.L., Ye, Z., and Korzh, V. (2012) Yolk syncytial layer formation is a failure of cytokinesis mediated by Rock1 function in the early zebrafish embryo. Biology Open. 1(8):747-753
Kondrychyn, I., Teh, C., Garcia-Lecea, M., Guan, Y., Kang, A., and Korzh, V. (2011) Zebrafish Enhancer TRAP Transgenic Line Database ZETRAP 2.0. Zebrafish. 8(4):181-182
Korzh, V., Teh, C., Kondrychyn, I., Chudakov, D.M., and Lukyanov, S. (2011) Visualizing Compound Transgenic Zebrafish in Development: A Tale of Green Fluorescent Protein and KillerRed. Zebrafish. 8(1):23-29
Poon, K.L., Liebling, M., Kondrychyn, I., Garcia-Lecea, M., and Korzh, V. (2010) Zebrafish cardiac enhancer trap lines: New tools for in vivo studies of cardiovascular development and disease. Developmental dynamics : an official publication of the American Association of Anatomists. 239(3):914-926
Winata, C.L., Korzh, S., Kondrychyn, I., Korzh, V., and Gong, Z. (2010) The role of vasculature and blood circulation in zebrafish swimbladder development. BMC Developmental Biology. 10:3
Kondrychyn, I., Garcia-Lecea, M., Emelyanov, A., Parinov, S., and Korzh, V. (2009) Genome-wide analysis of Tol2 transposon reintegration in zebrafish. BMC Genomics. 10:418
Winata, C.L., Korzh, S., Kondrychyn, I., Zheng, W., Korzh, V., and Gong, Z. (2009) Development of zebrafish swimbladder: the requirement of Hedgehog signaling in specification and organization of the three tissue layers. Developmental Biology. 331(2):222-236
Vasilyev, A., Liu, Y., Mudumana, S., Mangos, S., Lam, P.Y., Majumdar, A., Zhao, J., Poon, K.L., Kondrychyn, I., Korzh, V., and Drummond, I.A. (2009) Collective Cell Migration Drives Morphogenesis of the Kidney Nephron. PLoS Biology. 7(1):e9
García-Lecea, M., Kondrychyn, I., Fong, S.H., Ye, Z.R., and Korzh, V. (2008) In vivo Analysis of Choroid Plexus Morphogenesis in Zebrafish. PLoS One. 3(9):e3090
Ke, Z., Kondrichin, I., Gong, Z., and Korzh, V. (2008) Combined activity of the two Gli2 genes of zebrafish play a major role in Hedgehog signaling during zebrafish neurodevelopment. Molecular and Cellular Neuroscience. 37(2):388-401
Choo, B.G., Kondrichin, I., Parinov, S., Emelyanov, A., Go, W., Toh, W.C., and Korzh, V. (2006) Zebrafish transgenic Enhancer TRAP line database (ZETRAP). BMC Developmental Biology. 6:5
Parinov, S., Kondrichin, I., Korzh, V., and Emelyanov, A. (2004) Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafish genes in vivo. Developmental dynamics : an official publication of the American Association of Anatomists. 231(2):449-459