ZFIN ID: ZDB-LAB-111117-1
Peyriéras Lab
PI/Director: Peyriéras, Nadine
Contact Person: Peyriéras, Nadine
Email: nadine.peyrieras@inaf.cnrs-gif.fr
URL: http://www.inaf.cnrs-gif.fr/ned/equipe07_eng/accueil_07.html
Address: Team "Multiscale Dynamics in Animal Morphogenesis" CNRS-N&D Institut de Neurobiologie Alfred Fessard Avenue de la Terrasse 91198 Gif sur Yvette FRANCE
Country: France
Phone: +33 (0)1 69 82 41 42
Fax: +33 (0)1 69 82 34 47
Line Designation: isc


GENOMIC FEATURES ORIGINATING FROM THIS LAB
Show all 8 genomic features


STATEMENT OF RESEARCH INTERESTS


LAB MEMBERS
Duloquin, Louise Post-Doc Rizzi, Barbara Post-Doc Delile, Julien Graduate Student
Fabreges, Dimitri Graduate Student Keller, Raphael Graduate Student Ortiz, Antonio Graduate Student
Villoutreix, Paul Graduate Student Colin, Audrey Technical Staff Colin, Ingrid Technical Staff
Leconte, Ludovic Technical Staff Frain, Monique Savy, Thierry


ZEBRAFISH PUBLICATIONS OF LAB MEMBERS
Valanciunaite, J., Kempf, E., Seki, H., Danylchuk, D.I., Peyriéras, N., Niko, Y., Klymchenko, A.S. (2020) Polarity Mapping of Cells and Embryos by Improved Fluorescent Solvatochromic Pyrene Probe. Analytical chemistry. 92(9):6512-6520
Araya, C., Häkkinen, H.M., Carcamo, L., Cerda, M., Savy, T., Rookyard, C., Peyriéras, N., Clarke, J.D.W. (2019) Publisher Correction: Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate. Scientific Reports. 9:7699
Bloch, S., Thomas, M., Colin, I., Galant, S., Machado, E., Affaticati, P., Jenett, A., Yamamoto, K. (2019) Mesencephalic origin of the inferior lobe in zebrafish. BMC Biology. 17:22
Araya, C., Häkkinen, H.M., Carcamo, L., Cerda, M., Savy, T., Rookyard, C., Peyriéras, N., Clarke, J.D.W. (2019) Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate. Scientific Reports. 9:1835
Nguyen, H., Boix-Fabrés, J., Peyriéras, N., Kardash, E. (2019) 3D + Time Imaging and Image Reconstruction of Pectoral Fin During Zebrafish Embryogenesis. Methods in molecular biology (Clifton, N.J.). 2040:135-153
Andreiuk, B., Reisch, A., Lindecker, M., Follain, G., Peyriéras, N., Goetz, J.G., Klymchenko, A.S. (2017) Fluorescent Polymer Nanoparticles for Cell Barcoding In Vitro and In Vivo. Small (Weinheim an der Bergstrasse, Germany). 13(38)
Cornet, C., Calzolari, S., Miñana-Prieto, R., Dyballa, S., van Doornmalen, E., Rutjes, H., Savy, T., D'Amico, D., Terriente, J. (2017) ZeGlobalTox: An Innovative Approach to Address Organ Drug Toxicity Using Zebrafish. International Journal of Molecular Sciences. 18(4)
Delile, J., Herrmann, M., Peyriéras, N., Doursat, R. (2017) A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation. Nature communications. 8:13929
Dyballa, S., Savy, T., Germann, P., Mikula, K., Remesikova, M., Špir, R., Zecca, A., Peyriéras, N., Pujades, C. (2017) Distribution of neurosensory progenitor pools during inner ear morphogenesis unveiled by cell lineage reconstruction. eLIFE. 6
Faure, E., Savy, T., Rizzi, B., Melani, C., Stašová, O., Fabrèges, D., Špir, R., Hammons, M., Čúnderlík, R., Recher, G., Lombardot, B., Duloquin, L., Colin, I., Kollár, J., Desnoulez, S., Affaticati, P., Maury, B., Boyreau, A., Nief, J.Y., Calvat, P., Vernier, P., Frain, M., Lutfalla, G., Kergosien, Y., Suret, P., Remešíková, M., Doursat, R., Sarti, A., Mikula, K., Peyriéras, N., Bourgine, P. (2016) A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage. Nature communications. 7:8674
Fontaine, R., Affaticati, P., Bureau, C., Colin, I., Demarque, M., Dufour, S., Vernier, P., Yamamoto, K., Pasqualini, C. (2015) The Dopaminergic Neurons Controlling Anterior Pituitary Functions: Anatomy and Ontogenesis in Zebrafish. Endocrinology. 156(8):2934-48
Adjili, S., Favier, A., Fargier, G., Thomas, A., Massin, J., Monier, K., Favard, C., Vanbelle, C., Bruneau, S., Peyriéras, N., Andraud, C., Muriaux, D., Charreyre, M.T. (2015) Biocompatible photoresistant far-red emitting, fluorescent polymer probes, with near-infrared two-photon absorption, for living cell and zebrafish embryo imaging. Biomaterials. 46C:70-81
Affaticati, P., Yamamoto, K., Rizzi, B., Bureau, C., Peyriéras, N., Pasqualini, C., Demarque, M., Vernier, P. (2015) Identification of the optic recess region as a morphogenetic entity in the zebrafish forebrain. Scientific Reports. 5:8738
Castro-González, C., Luengo-Oroz, M.A., Duloquin, L., Savy, T., Rizzi, B., Desnoulez, S., Doursat, R., Kergosien, Y.L., Ledesma-Carbayo, M.J., Bourgine, P., Peyriéras, N., Santos, A. (2014) A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis. PLoS Computational Biology. 10:e1003670
Bonneau, B., Nougarède, A., Prudent, J., Popgeorgiev, N., Peyriéras, N., Rimokh, R., and Gillet, G. (2014) The Bcl-2 homolog Nrz inhibits binding of IP3 to its receptor to control calcium signaling during zebrafish epiboly. Science signaling. 7(312):ra14
Recher, G., Jouralet, J., Brombin, A., Heuzé, A., Mugniery, E., Hermel, J.M., Desnoulez, S., Savy, T., Herbomel, P., Bourrat, F., Peyriéras, N., Jamen, F., and Joly, J.S. (2013) Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis. Development (Cambridge, England). 140(24):4860-9
Dang, I., Gorelik, R., Sousa-Blin, C., Derivery, E., Guérin, C., Linkner, J., Nemethova, M., Dumortier, J.G., Giger, F.A., Chipysheva, T.A., Ermilova, V.D., Vacher, S., Campanacci, V., Herrada, I., Planson, A.G., Fetics, S., Henriot, V., David, V., Oguievetskaia, K., Lakisic, G., Pierre, F., Steffen, A., Boyreau, A., Peyriéras, N., Rottner, K., Zinn-Justin, S., Cherfils, J., Bièche, I., Alexandrova, A.Y., David, N.B., Small, J.V., Faix, J., Blanchoin, L., Gautreau, A. (2013) Inhibitory signalling to the Arp2/3 complex steers cell migration.. Nature. 503(7475):281-4
Mikut, R., Dickmeis, T., Driever, W., Geurts, P., Hamprecht, F.A., Kausler, B.X., Ledesma-Carbayo, M.J., Marée, R., Mikula, K., Pantazis, P., Ronneberger, O., Santos, A., Stotzka, R., Strähle, U., and Peyriéras, N. (2013) Automated Processing of Zebrafish Imaging Data: A Survey. Zebrafish. 10(3):401-21
Luengo-Oroz, M.A., Pastor, D., Castro, C., Faure, E., Savy, T., Lombardot, B., Rubio-Guivernau, J.L., Duloquin, L., Ledesma-Carbayo, M., Bourgine, P., Peyrieras, N., and Santos, A. (2012) 3D+t Morphological Processing: Applications to Embryogenesis Image Analysis. IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. 29(9):792-9
Luengo-Oroz, M., Rubio-Guivernau, J., Faure, E., Savy, T., Duloquin, L., Olivier, N., Pastor, D., Ledesma-Carbayo, M., Debarre, D., Bourgine, P., Beaurepaire, E., Peyrieras, N., and Santos, A. (2012) Methodology for reconstructing early zebrafish development from in-vivo multiphoton microscopy. IEEE transactions on image processing : a publication of the IEEE Signal Processing Society. 21(4):2335-2340
Rubio-Guivernau, J.L., Gurchenkov, V., Luengo-Oroz, M.A., Duloquin, L., Bourgine, P., Santos, A., Peyrieras, N., and Ledesma-Carbayo, M.J. (2012) Wavelet-based image fusion in multi-view three-dimensional microscopy. Bioinformatics (Oxford, England). 28(2):238-245
Mahou, P., Olivier, N., Labroille, G., Duloquin, L., Sintes, J.M., Peyriéras, N., Legouis, R., Débarre, D., and Beaurepaire, E. (2011) Combined third-harmonic generation and four-wave mixing microscopy of tissues and embryos. Biomedical Optics Express. 2(10):2837-2849
Mikula, K., Peyriéras, N., Remešíková, M., and Stašová, O. (2011) Segmentation of 3D cell membrane images by PDE methods and its applications. Computers in Biology and Medicine. 41(6):326-339
Olivier, N., Luengo-Oroz, M.A., Duloquin, L., Faure, E., Savy, T., Veilleux, I., Solinas, X., Débarre, D., Bourgine, P., Santos, A., Peyriéras, N., and Beaurepaire, E. (2010) Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy. Science (New York, N.Y.). 329(5994):967-971
Krivá, Z., Mikula, K., Peyriéras, N., Rizzi, B., Sarti, A., and Stašová, O. (2010) 3D early embryogenesis image filtering by nonlinear partial differential equations. Medical image analysis. 14(4):510-526
Campana, M., Maury, B., Dutreix, M., Peyriéras, N., and Sarti, A. (2010) Methods toward in vivo measurement of zebrafish epithelial and deep cell proliferation. Computer methods and programs in biomedicine. 98(2):103-117
Castro-Gonzalez, C., Luengo-Oroz, M.A., Douloquin, L., Savy, T., Melani, C., Desnoulez, S., Ledesma-Carbayo, M.J., Bourginey, P., Peyrieras, N., and Santos, A. (2010) Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 1:5520-5523
Castro, C., Luengo-Oroz, M.A., Desnoulez, S., Duloquin, L., Fernandez-de-Manuel, L., Montagna, S., Ledesma-Carbayo, M.J., Bourgine, P., Peyrieras, N., and Santos, A. (2009) An automatic quantification and registration strategy to create a gene expression atlas of zebrafish embryogenesis. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 1:1469-1472
Pastor, D., Luengo-Oroz, M.A., Lombardot, B., Gonzalvez, I., Duloquin, L., Savy, T., Bourgine, P., Peyrieras, N., and Santos, A. (2009) Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 1:970-973
Rizzi, B., and Sarti, A. (2009) Region-Based PDEs for Cells Counting and Segmentation in 3D+Time Images of Vertebrate Early Embryogenesis. International journal of biomedical imaging. 2009:968986
Rizzi, B., Campana, M., Zanella, C., Melani, C., Cunderlik, R., Kriva, Z., Bourgine, P., Mikula, K., Peyriéras, N., and Sarti, A. (2007) 3-d zebrafish embryo image filtering by nonlinear partial differential equations. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 1(1):6251-6254
Zanella, C., Rizzi, B., Melani, C., Campana, M., Bourgine, P., Mikula, K., Peyriéras, N., and Sarti, A. (2007) Segmentation of cells from 3-d confocal images of live zebrafish embryo. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 1(1):6027-6030