ZFIN Lab: Amacher Lab

ZFIN ID: ZDB-LAB-001018-2

Amacher Lab

PI/Director:	Amacher, Sharon
Contact Person:	Amacher, Sharon
Email:	amacher.6@osu.edu
URL:	http://molgen.osu.edu/amacher
Address:	The Ohio State University 125 Rightmire Hall 1060 Carmack Road Columbus, OH 43210
Country:	United States
Phone:	(614) 688-1338
Fax:
Line Designation:	oz

GENOMIC FEATURES ORIGINATING FROM THIS LAB

Show first 50 of 67 genomic features

STATEMENT OF RESEARCH INTERESTS

LAB MEMBERS

Berberoglu, Michael Post-Doc	Gallagher, Thomas Post-Doc	Maxwell, Adrienne Post-Doc
Tietz, Kiel Graduate Student	Wachholder, Kimberly Graduate Student	Leist, Rachel Fish Facility Staff
Derr, Nicolas Technical Staff

ZEBRAFISH PUBLICATIONS OF LAB MEMBERS

Chong, J.X., Talbot, J.C., Teets, E.M., Previs, S., Martin, B.L., Shively, K.M., Marvin, C.T., Aylsworth, A.S., Saadeh-Haddad, R., Schatz, U.A., Inzana, F., Ben-Omran, T., Almusafri, F., Al-Mulla, M., Buckingham, K.J., Harel, T., Mor-Shaked, H., Radhakrishnan, P., Girisha, K.M., Nayak, S.S., Shukla, A., Dieterich, K., Faure, J., Rendu, J., Capri, Y., Latypova, X., Nickerson, D.A., Warshaw, D.M., Janssen, P.M.L., University of Washington Center for Mendelian Genomics., Amacher, S.L., Bamshad, M.J. (2020) Mutations in MYLPF Cause a Novel Segmental Amyoplasia that Manifests as Distal Arthrogryposis. American journal of human genetics. 107(2):293-310

Tietz, K.T., Gallagher, T.L., Mannings, M.C., Morrow, Z.T., Derr, N.L., Amacher, S.L. (2020) Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts. Developmental Biology. 462:129-140

Gangras, P., Gallagher, T.L., Parthun, M.A., Yi, Z., Patton, R.D., Tietz, K.T., Deans, N.C., Bundschuh, R., Amacher, S.L., Singh, G. (2020) Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets. PLoS Genetics. 16:e1008830

Hromowyk, K.J., Talbot, J.C., Martin, B.L., Janssen, P.M.L., Amacher, S.L. (2020) Cell fusion is differentially regulated in zebrafish post-embryonic slow and fast muscle. Developmental Biology. 462(1):85-100

Talbot, J.C., Teets, E.M., Ratnayake, D., Duy, P.Q., Currie, P.D., Amacher, S.L. (2019) Muscle precursor cell movements in zebrafish are dynamic and require six-family genes. Development (Cambridge, England). 146(10):

Ma, F., Dong, Z., Berberoglu, M.A. (2019) Expression of RNA-binding protein Rbfox1l demarcates a restricted population of dorsal telencephalic neurons within the adult zebrafish brain. Gene expression patterns : GEP. 31:32-41

Stainier, D.Y.R., Raz, E., Lawson, N.D., Ekker, S.C., Burdine, R.D., Eisen, J.S., Ingham, P.W., Schulte-Merker, S., Yelon, D., Weinstein, B.M., Mullins, M.C., Wilson, S.W., Ramakrishnan, L., Amacher, S.L., Neuhauss, S.C.F., Meng, A., Mochizuki, N., Panula, P., Moens, C.B. (2017) Guidelines for morpholino use in zebrafish. PLoS Genetics. 13:e1007000

Morrow, Z.T., Maxwell, A.M., Hoshijima, K., Talbot, J.C., Grunwald, D.J., Amacher, S.L. (2017) tbx6l and tbx16 are redundantly required for posterior paraxial mesoderm formation during zebrafish embryogenesis. Developmental dynamics : an official publication of the American Association of Anatomists. 246(10):759-769

Gallagher, T.L., Tietz, K.T., Morrow, Z.T., McCammon, J.M., Goldrich, M.L., Derr, N.L., Amacher, S.L. (2017) Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation. Developmental Biology. 429(1):225-239

Duy, P.Q., Berberoglu, M.A., Beattie, C.E., Hall, C.W. (2017) Cellular responses to recurrent pentylenetetrazole-induced seizures in the adult zebrafish brain. Neuroscience. 349:118-127

Berberoglu, M.A., Gallagher, T.L., Morrow, Z.T., Talbot, J.C., Hromowyk, K.J., Tenente, I.M., Langenau, D.M., Amacher, S.L. (2017) Satellite-like cells contribute to pax7-dependent skeletal muscle repair in adult zebrafish. Developmental Biology. 424(2):162-180

Li, M., Hromowyk, K.J., Amacher, S.L., Currie, P.D. (2017) Muscular dystrophy modeling in zebrafish. Methods in cell biology. 138:347-380

Miguel, J.C., Maxwell, A.A., Hsieh, J.J., Harnisch, L.C., Al Alam, D., Polk, D.B., Lien, C.L., Watson, A.J., Frey, M.R. (2017) Epidermal growth factor suppresses intestinal epithelial cell shedding via a MAPK dependent pathway. Journal of Cell Science. 130(1):90-96

Nissim, S., Weeksb, O., Talbot, J.C., Hedgepeth, J.W., Wucherpfennig, J., Schatzman-Bone, S., Swinburne, I., Cortes, M., Alexa, K., Megason, S., North, T.E., Amacher, S.L., Goessling, W. (2016) Iterative use of nuclear receptor Nr5a2 regulates multiple stages of liver and pancreas development. Developmental Biology. 418(1):108-23

Talbot, J.C., Nichols, J.T., Yan, Y.L., Leonard, I.F., BreMiller, R.A., Amacher, S.L., Postlethwait, J.H., Kimmel, C.B. (2016) Pharyngeal morphogenesis requires fras1-itga8- dependent epithelial-mesenchymal interaction. Developmental Biology. 416(1):136-48

Martin, B.L., Gallagher, T.L., Rastogi, N., Davis, J.P., Beattie, C.E., Amacher, S.L., Janssen, P.M. (2015) In vivo assessment of contractile strength distinguishes differential gene function in skeletal muscle of zebrafish larvae. Journal of applied physiology (Bethesda, Md. : 1985). 119(7):799-806

Shih, N.P., François, P., Delaune, E.A., Amacher, S.L. (2015) Dynamics of the slowing segmentation clock reveal alternating two-segment periodicity. Development (Cambridge, England). 142:1785-93

Talbot, J.C., Amacher, S.L. (2014) A Streamlined CRISPR Pipeline to Reliably Generate Zebrafish Frameshifting Alleles. Zebrafish. 11:583-585

Berberoglu, M.A., Dong, Z., Li, G., Zheng, J., Trejo Martinez, L.d.e.l. .C., Peng, J., Wagle, M., Reichholf, B., Petritsch, C., Li, H., Pleasure, S.J., Guo, S. (2014) Heterogeneously Expressed fezf2 Patterns Gradient Notch Activity in Balancing the Quiescence, Proliferation, and Differentiation of Adult Neural Stem Cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34:13911-23

Fior, R., Maxwell, A.A., Ma, T.P., Vezzaro, A., Moens, C.B., Amacher, S.L., Lewis, J., and Saúde, L. (2012) The differentiation and movement of presomitic mesoderm progenitor cells are controlled by Mesogenin 1. Development (Cambridge, England). 139(24):4656-4665

Delaune, E.A., François, P., Shih, N.P., and Amacher, S.L. (2012) Single-cell-resolution imaging of the impact of notch signaling and mitosis on segmentation clock dynamics. Developmental Cell. 23(5):995-1005

Parra, M.K., Gallagher, T.L., Amacher, S.L., Mohandas, N., and Conboy, J.G. (2012) Deep intron elements mediate nested splicing events at consecutive AG-dinucleotides to regulate alternative 3' splice site choice in vertebrate 4.1 genes. Molecular and cellular biology. 32(11):2044-2053

Dehnert, K.W., Baskin, J.M., Laughlin, S.T., Beahm, B.J., Naidu, N.N., Amacher, S.L., and Bertozzi, C.R. (2012) Imaging the Sialome during Zebrafish Development with Copper-Free Click Chemistry. Chembiochem : a European journal of chemical biology. 13(3):353-357

Gallagher, T.L., Arribere, J.A., Geurts, P.A., Exner, C.R., McDonald, K.L., Dill, K.K., Marr, H.L., Adkar, S.S., Garnett, A.T., Amacher, S.L., and Conboy, J.G. (2011) Rbfox-regulated alternative splicing is critical for zebrafish cardiac and skeletal muscle functions. Developmental Biology. 359(2):251-61

Dehnert, K.W., Beahm, B.J., Huynh, T.T., Baskin, J.M., Laughlin, S.T., Wang, W., Wu, P., Amacher, S.L., and Bertozzi, C.R. (2011) Metabolic Labeling of Fucosylated Glycans in Developing Zebrafish. ACS Chemical Biology. 6(6):547-52

Davis, E.E., Zhang, Q., Liu, Q., Diplas, B.H., Davey, L.M., Hartley, J., Stoetzel, C., Szymanska, K., Ramaswami, G., Logan, C.V., Muzny, D.M., Young, A.C., Wheeler, D.A., Cruz, P., Morgan, M., Lewis, L.R., Cherukuri, P., Maskeri, B., Hansen, N.F., Mullikin, J.C., Blakesley, R.W., Bouffard, G.G., NISC Comparative Sequencing Program, Gyapay, G., Rieger, S., Tönshoff, B., Kern, I., Soliman, N.A., Neuhaus, T.J., Swoboda, K.J., Kayserili, H., Gallagher, T.E., Lewis, R.A., Bergmann, C., Otto, E.A., Saunier, S., Scambler, P.J., Beales, P.L., Gleeson, J.G., Maher, E.R., Attié-Bitach, T., Dollfus, H., Johnson, C.A., Green, E.D., Gibbs, R.A., Hildebrandt, F., Pierce, E.A., Katsanis, N. (2011) TTC21B contributes both causal and modifying alleles across the ciliopathy spectrum. Nature Genetics. 43(3):189-196

McCammon, J.M., Doyon, Y., and Amacher, S.L. (2011) Inducing High Rates of Targeted Mutagenesis in Zebrafish Using Zinc Finger Nucleases (ZFNs). Methods in molecular biology (Clifton, N.J.). 770:505-527

Baskin, J.M., Dehnert, K.W., Laughlin, S.T., Amacher, S.L., and Bertozzi, C.R. (2010) Visualizing enveloping layer glycans during zebrafish early embryogenesis. Proceedings of the National Academy of Sciences of the United States of America. 107(23):10360-10365

McCammon, J.M., and Amacher, S.L. (2010) Using zinc finger nucleases for efficient and heritable gene disruption in zebrafish. Methods in molecular biology (Clifton, N.J.). 649:281-298

Garnett, A.T., Han, T.M., Gilchrist, M.J., Smith, J.C., Eisen, M.B., Wardle, F.C., and Amacher, S.L. (2009) Identification of direct T-box target genes in the developing zebrafish mesoderm. Development (Cambridge, England). 136(5):749-760

Amacher, S.L. (2008) Emerging gene knockout technology in zebrafish: zinc-finger nucleases. Briefings in functional genomics & proteomics. 7(6):460-464

Doyon, Y., McCammon, J.M., Miller, J.C., Faraji, F., Ngo, C., Katibah, G.E., Amora, R., Hocking, T.D., Zhang, L., Rebar, E.J., Gregory, P.D., Urnov, F.D., and Amacher, S.L. (2008) Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nat. Biotechnol.. 26(6):702-708

Laughlin, S.T., Baskin, J.M., Amacher, S.L., and Bertozzi, C.R. (2008) In vivo imaging of membrane-associated glycans in developing zebrafish. Science (New York, N.Y.). 320(5876):664-667

Ouyang, M., Garnett, A.T., Han, T.M., Hama, K., Lee, A., Deng, Y., Lee, N., Liu, H.Y., Amacher, S.L., Farber, S.A., and Ho, S.Y. (2008) A web based resource characterizing the zebrafish developmental profile of over 16,000 transcripts. Gene expression patterns : GEP. 8(3):171-180

Daggett, D.F., Domingo, C.R., Currie, P.D., and Amacher, S.L. (2007) Control of morphogenetic cell movements in the early zebrafish myotome. Developmental Biology. 309(2):169-179

Dill, K.K., and Amacher, S.L. (2005) tortuga refines Notch pathway gene expression in the zebrafish presomitic mesoderm at the post-transcriptional level. Developmental Biology. 287(2):225-236

Henry, C.A., McNulty, I.M., Durst, W.A., Munchel, S.E., and Amacher, S.L. (2005) Interactions between muscle fibers and segment boundaries in zebrafish. Developmental Biology. 287(2):346-360

Henry, C.A., and Amacher, S.L. (2004) Zebrafish slow muscle cell migration induces a wave of fast muscle morphogenesis. Developmental Cell. 7(6):917-923

Daggett, D.F., Boyd, C.A,. Gautier, P., Bryson-Richardson, R.J., Thisse, C., Thisse, B., Amacher, S.L., and Currie, P.D. (2004) Developmentally restricted actin-regulatory molecules control morphogenetic cell movements in the zebrafish gastrula. Current biology : CB. 14(18):632-638

Henry, C.A., Urban, M.K., Dill, K.K., Merlie, J.P., Page, M.F., Kimmel, C.B., and Amacher, S.L. (2002) Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries. Development (Cambridge, England). 129(15):3693-3704

Amacher, S.L., Draper, B.W., Summers, B.R., and Kimmel, C.B. (2002) The zebrafish T-box genes no tail and spadetail are required for development of trunk and tail mesoderm and medial floor plate. Development (Cambridge, England). 129(14):3311-3323

Brennan, C., Amacher, S.L., and Currie, P.D. (2002) Somitogenesis. Results and problems in cell differentiation. 40:271-297

Gray, M., Moens, C.B., Amacher, S.L., Eisen, J.S., and Beattie, C.E. (2001) Zebrafish deadly seven functions in neurogenesis. Developmental Biology. 237(2):306-323

Amacher, S.L. (1999) Transcriptional regulation during zebrafish embryogenesis. Current opinion in genetics & development. 9(5):548-552

Griffin, K.J.P., Amacher, S.L., Kimmel, C.B., and Kimelman, D. (1998) Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes. Development (Cambridge, England). 125:3379-3388

Yamamoto, A., Amacher, S.L., Kim, S.-H., Geissert, D., Kimmel, C.B., and De Robertis, E.M. (1998) Zebrafish paraxial protocadherin is a downstream target of spadetail involved in morphogenesis of gastrula mesoderm. Development (Cambridge, England). 125:3389-3397

Amacher, S.L. and Kimmel, C.B. (1998) Promoting notochord fate and repressing muscle development in zebrafish axial mesoderm. Development (Cambridge, England). 125:1397-1406

Amacher, S.L. and Kimmel, C.B. (1998) Does vertebrate segmentation utilize pair-rules?. Developmental Biology. 198:201

Halpern, M.E., Hatta, K., Amacher, S.L., Talbot, W.S., Yan, Y.-L., Thisse, B., Thisse, C., Postlethwait, J.H., and Kimmel, C.B. (1997) Genetic interactions in zebrafish midline development. Developmental Biology. 187(2):154-170

Fisher, S., Amacher, S.L., and Halpern, M.E. (1997) Loss of cerebum function ventralizes the zebrafish embryo. Development (Cambridge, England). 124(7):1301-1311

Devoto, S.H., Melancon, E., Amacher, S.L., Eisen, J.S., and Westerfield, M. (1996) Influence of axial mesoderm on the development of slow muscle precursors. Developmental Biology. 175(2):386