Gene

nr6a1a

ID

ZDB-GENE-991207-19

Name

nuclear receptor subfamily 6, group A, member 1a

Symbol

nr6a1a Nomenclature History

Previous Names

nr6a1 (1)
GCNF-A (1)
gcnf (1)
zfGCNF (1)

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and protein homodimerization activity. Predicted to be involved in cell migration; nervous system development; and regulation of transcription, DNA-templated. Predicted to localize to cytoplasm; nucleus; and transcription factor complex. Is expressed in cranial ganglion; myotome; neural plate; and telencephalon. Orthologous to human NR6A1 (nuclear receptor subfamily 6 group A member 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

aj007703 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With nr6a1a Human Ortholog

No data available

Associated With nr6a1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000536	Nuclear hormone receptor, ligand-binding domain
Domain	IPR001628	Zinc finger, nuclear hormone receptor-type
Family	IPR001723	Nuclear hormone receptor
Homologous_superfamily	IPR013088	Zinc finger, NHR/GATA-type
Homologous_superfamily	IPR035500	Nuclear hormone receptor-like domain superfamily

Domain Details Per Protein

Protein	Length	Nuclear hormone receptor	Nuclear hormone receptor, ligand-binding domain	Nuclear hormone receptor-like domain superfamily	Zinc finger, NHR/GATA-type	Zinc finger, nuclear hormone receptor-type
UniProtKB:B3DH62 InterPro	448
UniProtKB:Q9PU65 InterPro	477

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	nr6a1a-201 (1) Ensembl	Havana	235 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	nr6a1a-202 (1) Ensembl	Havana	1464 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations