ZFIN ID: ZDB-GENE-990415-76
Gene Name: forkhead box A sequence
Gene Symbol: foxa    Nomenclature History

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Previous Names: fkd4 (1), forkhead-4, zf-FKH2, zgc:100769

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Is expressed in several structures, including central nervous system; hypochord; margin; notochord; and prechordal plate.
Genome Resources: Alliance (1),  Gene:30539 (1),  Ensembl(GRCz11):ENSDARG00000087094 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
CRISPR1-foxa
3
MO1-foxa N/A 1
PHENOTYPE No data available
DISEASE ASSOCIATED WITH foxa HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH foxa VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR001766 Fork head domain
Conserved_site IPR018122 Fork head domain conserved site1
Conserved_site IPR030456 Fork head domain conserved site 2
Homologous_superfamily IPR036388 Winged helix-like DNA-binding domain superfamily
Homologous_superfamily IPR036390 Winged helix DNA-binding domain superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA foxa-201 (1)    Ensembl 1956
foxa-202 (1)    Ensembl 1121
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM foxa No data available
MARKER RELATIONSHIPS
foxa Contained in: [BAC] CH73-22O18 (1), CH73-127I13 (1)
foxa Encodes: [cDNA] MGC:100769 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_131282 (1) 1974 bp
Genomic GenBank:FP016207 (1) 126002 bp
Select Tool
Polypeptide UniProtKB:F1QC30 (1) 355 aa
Sequence Information (all 20)
ORTHOLOGY for foxa ( Chr: 14 )
CITATIONS (50)