ZFIN ID: ZDB-GENE-990415-33
Gene Name: chordin
Gene Symbol: chrd
Sequence Ontology ID : SO:0000704

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Previous Names: chd (1), chordino (1), din, dino (din) (1), dino, fe47d04, wu:fe47d04

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 180 figures from 125 publications
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
  adaxial cell, anal fin, anal fin lepidotrichium, anatomical structure (all 55) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
b215 Unknown Unknown Unknown G_RAYS
chrd_unspecified Unspecified Unknown Unknown
hi2293Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • ks1 Unknown Unknown Unknown SPONTANEOUS
    kt440 Unknown Unknown Unknown
    m52 Unknown Unknown Unknown EMS
    rk2 Unknown Unknown Unknown ENU
    tm84 Unknown Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • tt250 Point Mutation Unknown Splice Site, Exon Loss ENU
  • China Zebrafish Resource Center (CZRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: CRISPR1-chrd (1), MO1-chrd (1), MO2-chrd (1), TALEN1-chrd (1)
    PHENOTYPE
    Data: 54 figures from 29 publications
    Observed in: blood island, brain anterior region, brain, caudal fin (all 65) expand
    DISEASE ASSOCIATED WITH chrd HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process anterior/posterior axis specification (more)
    Cellular Component extracellular region (more)
    Molecular Function protein binding (more)
    GO Terms (all 19)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001007 (1)
  • InterPro:IPR010895 (1)
  • InterPro:IPR016353 (1)
  • PROSITE:PS01208 (1)
  • PROSITE:PS50184 (1)
  • PROSITE:PS50933 (1)
  • Pfam:PF00093 (1)
  • Pfam:PF07452 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA chd-001 (1) 3096
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM chrd
    Tg(hsp70l:chrd)
    MARKER RELATIONSHIPS
    chrdContained in: [BAC] CH211-229N1 (1) (order this)
    chrdEncodes: [EST] fe47d04
    [cDNA] MGC:193864 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_130973 (1) 3178bp
    Genomic GenBank:CR381579 (1) 130841bp
    Select Tool
    Polypeptide UniProtKB:B3DH08 (1) 940aa
    Sequence Clusters UniGene:75804 (1)
    Sequence Information (all 20)
    OTHER chrd GENE PAGES
  • Alliance (1)
  • Gene:30161 (1)
  • VEGA:OTTDARG00000035823 (1)
  • Ensembl(GRCz10):ENSDARG00000006110 (1)
  • ORTHOLOGY for chrd (Chr: 15)
    CITATIONS (351)