ZFIN ID: ZDB-GENE-990415-259
Gene Name: chloride channel, nucleotide-sensitive, 1A
Gene Symbol: clns1a
Sequence Ontology ID : SO:0000704

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Previous Name: icln

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in axon extension; predicted to localize to the cytoplasmic part, methylosome, and plasma membrane; orthologous to human CLNS1A (chloride nucleotide-sensitive channel 1A).
GENE EXPRESSION
All Expression Data: Fig. 5 from Winkler et al., 2005
Wild-type Stages, Structures: Pharyngula:Prim-15 (30.0h-36.0h) to Pharyngula:Prim-15 (30.0h-36.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: Fig. 5 from Winkler et al., 2005
Observed in:
DISEASE ASSOCIATED WITH clns1a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH clns1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process axon extension (more)
Cellular Component cytosol (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003521 (1)
  • InterPro:IPR011993 (1)
  • InterPro:IPR039924 (1)
  • Pfam:PF03517 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clns1a-001 (1) 1268
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM clns1a No data available
    MARKER RELATIONSHIPS
    clns1aContained in: [BAC] CH73-39G20 (1) (order this), CH73-293K19 (1) (order this)
    clns1aEncodes: [cDNA] MGC:56679 (1) (order this), MGC:77102 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131424 (1)
    Genomic GenBank:CU570791 (1) 141786bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IJ12 (1) 249aa
    Sequence Clusters UniGene:84493 (1)
    Sequence Information (all 18)
    OTHER clns1a GENE PAGES
  • Alliance (1)
  • Gene:30699 (1)
  • VEGA:OTTDARG00000032412 (1)
  • Ensembl(GRCz11):ENSDARG00000103027 (1)
  • ORTHOLOGY for clns1a (Chr: 18)
    CITATIONS (16)