ZFIN ID: ZDB-GENE-990415-243
Gene Name: retinoid x receptor, alpha b
Gene Symbol: rxrab
Sequence Ontology ID : SO:0000704

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Previous Names: rxra, rxrg, etID309731.5 (1), NR2B1-A (1), RXRalpha-A (1)

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 18 figures from 7 publications
Directly Submitted Expression Data: 7 figures (23 images) from Thisse et al., 2008 [u29894]
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Larval:Day 4 (96.0h-120.0h)
  atrial endocardium, pectoral fin, retina, retinal inner nuclear layer (all 13) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1205 Point Mutation Unknown Premature Stop ENU
sa11783 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16874 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rxrab HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process positive regulation of transcription from RNA polymerase II promoter (more)
    Cellular Component nucleus (more)
    Molecular Function 9-cis retinoic acid receptor activity (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000003 (1)
  • InterPro:IPR000536 (1)
  • InterPro:IPR001628 (1)
  • InterPro:IPR001723 (1)
  • InterPro:IPR013088 (1)
  • InterPro:IPR021780 (1)
  • PROSITE:PS00031 (1)
  • PROSITE:PS51030 (1)
  • Pfam:PF00104 (1)
  • Pfam:PF00105 (1)
  • Pfam:PF11825 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rxrab-001 (1) 1721
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rxrab No data available
    MARKER RELATIONSHIPS
    rxrabContained in: [BAC] CH73-262B19 (1) (order this)
    rxrabEncodes: [EST] u29894 (2) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131153 (1) 1285bp
    Genomic GenBank:FP016250 (1) 124349bp
    Select Tool
    Polypeptide UniProtKB:F1RDN3 (1) 379aa
    Sequence Clusters UniGene:624 (1)
    Sequence Information (all 17)
    OTHER rxrab GENE PAGES
  • Alliance (1)
  • Gene:793011 (1)
  • VEGA:OTTDARG00000032322 (1)
  • Ensembl(GRCz10):ENSDARG00000035127 (1)
  • ORTHOLOGY for rxrab (Chr: 5)
    CITATIONS (34)