ZFIN ID: ZDB-GENE-990415-201
Gene Name: paired box 7a
Gene Symbol: pax7a
Sequence Ontology ID : SO:0000704

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Previous Names: pax7 (1), pax7c (1), pax7d (1), pax7e (1)

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 49 figures from 29 publications
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
oz19 Complex Unknown Unknown CRISPR
oz23 Indel Exon 2 Frameshift, Premature Stop CRISPR
sa14696 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35152 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41908 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • umu3 Small Deletion Unknown Frameshift, Premature Stop TALEN
    Targeting reagents:
    PHENOTYPE
    Data: Fig. 6 from Minchin et al., 2008
    Observed in:
    DISEASE ASSOCIATED WITH pax7a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    alveolar rhabdomyosarcoma Rhabdomyosarcoma 2, alveolar 268220
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of xanthophore differentiation (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001523 (1)
  • InterPro:IPR003654 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR022106 (1)
  • InterPro:IPR036388 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00034 (1)
  • PROSITE:PS50071 (1)
  • PROSITE:PS50803 (1)
  • PROSITE:PS51057 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF00292 (1)
  • Pfam:PF12360 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ottdart00000045470 (1) 6932
    pax7a-002 (1) 2377
    pax7a-003 (1) 2294
    pax7a-004 (1) 1834
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pax7a
    MARKER RELATIONSHIPS
    pax7aContained in: [BAC] CH73-132O13 (1) (order this), CH73-220M10 (1) (order this), CH211-168O24 (1) (order this)
    pax7aEncodes: [cDNA] MGC:195012 (1) (order this), MGC:195022 (1) (order this), MGC:195043 (1) (order this), MGC:195223 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131326 (1) 2403bp
    Genomic GenBank:BX957335 (1) 168444bp
    Select Tool
    Polypeptide UniProtKB:O57418 (1) 507aa
    Sequence Clusters UniGene:150230 (1)
    Sequence Information (all 49)
    OTHER pax7a GENE PAGES
  • Alliance (1)
  • Gene:30587 (1)
  • VEGA:OTTDARG00000034920 (1)
  • Ensembl(GRCz10):ENSDARG00000100398 (1)
  • ORTHOLOGY for pax7a (Chr: 11)
    CITATIONS (83)