ZFIN ID: ZDB-GENE-990415-180
Gene Name: cleavage and polyadenylation specific factor 4
Gene Symbol: cpsf4    Nomenclature History

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Previous Names: nar (1), no arches (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have nucleic acid binding activity and zinc ion binding activity. Involved in eye photoreceptor cell development. Is expressed in unfertilized egg. Orthologous to human CPSF4 (cleavage and polyadenylation specific factor 4).
Genome Resources: Alliance (1),  Gene:30203 (1),  Ensembl(GRCz11):ENSDARG00000020217 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55271]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 4 (96.0h-120.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1Tg Transgenic Insertion 5' UTR Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi1364bTg Transgenic Insertion Intron 2 Unknown DNA
    sa760 Point Mutation Unknown Splice Site ENU
    sa20096 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • DISEASE ASSOCIATED WITH cpsf4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cpsf4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process eye photoreceptor cell development (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cpsf4-201 (1)    Ensembl 1874
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cpsf4 No data available
    MARKER RELATIONSHIPS
    cpsf4 Contained in: [BAC] CH211-194I10 (1)
    cpsf4 Encodes: [cDNA] MGC:55271 (1), MGC:191631 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_131009 (1) 1879 nt
    Genomic GenBank:AL928657 (1) 187734 nt
    Select Tool
    Polypeptide UniProtKB:F1Q949 (1) 271 aa
    Sequence Information (all 20)
    ORTHOLOGY for cpsf4 ( Chr: 3 )
    CITATIONS (33)