ZFIN ID: ZDB-GENE-990415-180
Gene Name: cleavage and polyadenylation specific factor 4
Gene Symbol: cpsf4
Sequence Ontology ID : SO:0000704

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Previous Names: nar (1), no arches (1)

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55271]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 4 (96.0h-120.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi1364bTg Transgenic Insertion Unknown Unknown DNA
    sa760 Point Mutation Unknown Splice Site ENU
    sa20096 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 6 figures from 3 publications
    Observed in:
    DISEASE ASSOCIATED WITH cpsf4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cpsf4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process eye photoreceptor cell development (more)
    Cellular Component mRNA cleavage and polyadenylation specificity factor complex (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000571 (1)
  • InterPro:IPR001878 (1)
  • InterPro:IPR036855 (1)
  • InterPro:IPR036875 (1)
  • PROSITE:PS50103 (1)
  • PROSITE:PS50158 (1)
  • Pfam:PF00098 (1)
  • Pfam:PF00642 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cpsf4-001 (1) 1874
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cpsf4 No data available
    MARKER RELATIONSHIPS
    cpsf4Contained in: [BAC] CH211-194I10 (1) (order this)
    cpsf4Encodes: [cDNA] MGC:55271 (1) (order this), MGC:191631 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131009 (1) 1879bp
    Genomic GenBank:AL928657 (1) 187734bp
    Select Tool
    Polypeptide UniProtKB:F1Q949 (1) 271aa
    Sequence Clusters UniGene:75095 (1)
    Sequence Information (all 21)
    OTHER cpsf4 GENE PAGES
  • Alliance (1)
  • Gene:30203 (1)
  • VEGA:OTTDARG00000020242 (1)
  • Ensembl(GRCz11):ENSDARG00000020217 (2)
  • ORTHOLOGY for cpsf4 (Chr: 3)
    CITATIONS (31)