ZFIN ID: ZDB-GENE-990415-169
Gene Name: netrin 1a
Gene Symbol: ntn1a
Sequence Ontology ID : SO:0000704

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Previous Names: net1a (1), ntn2, net2, zgc:136732

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 28 figures from 20 publications
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
  brain, diencephalon, floor plate rhombomere region, forebrain (all 21) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015834Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la025409Tg Transgenic Insertion Unknown Unknown DNA
    la025410Tg Transgenic Insertion Unknown Unknown DNA
    la025411Tg Transgenic Insertion Unknown Unknown DNA
    sa12269 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14131 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40663 Point Mutation Unknown Unknown ENU
    Targeting reagents: MO1-ntn1a (1), MO2-ntn1a (1), MO3-ntn1a (1), MO4-ntn1a (1)
    PHENOTYPE
    Data: 14 figures from 8 publications
    Observed in: activation of cysteine-type endopeptidase activity involved in apoptotic process, angiogenesis, anterior commissure axon extension, anterior commissure morphogenesis (all 32) expand
    DISEASE ASSOCIATED WITH ntn1a HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process anterior commissure morphogenesis (more)
    Cellular Component extracellular region (more)
    GO Terms (all 18)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001134 (1)
  • InterPro:IPR002049 (1)
  • InterPro:IPR008211 (1)
  • InterPro:IPR008979 (1)
  • InterPro:IPR008993 (1)
  • InterPro:IPR018933 (1)
  • PROSITE:PS01248 (1)
  • PROSITE:PS50027 (1)
  • PROSITE:PS50189 (1)
  • PROSITE:PS51117 (1)
  • Pfam:PF00053 (1)
  • Pfam:PF00055 (1)
  • Pfam:PF01759 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ntn1a-001 (1) 6815
    ntn1a-002 (1) 1773
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ntn1a No data available
    MARKER RELATIONSHIPS
    ntn1aContained in: [BAC] CH211-279I13 (1) (order this)
    ntn1aEncodes: [cDNA] MGC:136732 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131029 (1) 3208bp
    Genomic GenBank:BX255899 (1) 149442bp
    Select Tool
    Polypeptide UniProtKB:A0A0B5JPZ7 (1) 603aa
    Sequence Clusters UniGene:545 (1)
    Sequence Information (all 23)
    OTHER ntn1a GENE PAGES
  • Alliance (1)
  • Gene:30227 (1)
  • VEGA:OTTDARG00000023583 (1)
  • Ensembl(GRCz10):ENSDARG00000105112 (1)
  • ORTHOLOGY for ntn1a (Chr: 6)
    CITATIONS (68)