ZFIN ID: ZDB-GENE-990415-113
Gene Name: homeobox C6a
Gene Symbol: hoxc6a    Nomenclature History

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Previous Names: hoxc-6, hoxc6, etID228114.23 (1), ZF-61, zgc:101882

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification. Predicted to localize to nucleus. Is expressed in several structures, including ectoderm; mesoderm; nervous system; pectoral fin; and somite. Orthologous to human HOXC6 (homeobox C6).
Genome Resources: Alliance (1),  Gene:30346 (1),  Ensembl(GRCz11):ENSDARG00000070343 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12505 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxc6a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxc6a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA hoxc6a-201 (1)    Ensembl 757
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM hoxc6a No data available
    MARKER RELATIONSHIPS
    hoxc6a Contained in: [BAC] DKEY-81P22 (1) (order this)
    hoxc6a Encodes: [EST] eu620 (1), IMAGE:7140528 (1)
    [cDNA] MGC:101882 (1), MGC:192224 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_131123 (1) 696 nt
    Genomic GenBank:BX005254 (1) 160012 nt
    Select Tool
    Polypeptide UniProtKB:P15862 (1) 231 aa
    Sequence Information (all 27)
    ORTHOLOGY for hoxc6a ( Chr: 23 )
    CITATIONS (55)